miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 142412 0.66 0.919815
Target:  5'- cGUCGg--CGGCGCCgggCGCGAUUaGGa -3'
miRNA:   3'- aCGGCuuaGUCGCGGa--GCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 16436 0.66 0.919815
Target:  5'- cGCCGAGUCcGCGCUuguUCcCGAcUCCGa -3'
miRNA:   3'- aCGGCUUAGuCGCGG---AGcGCU-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 116802 0.66 0.925226
Target:  5'- aGCCGGcUCgGGCGCCguagCGCGggUCGc -3'
miRNA:   3'- aCGGCUuAG-UCGCGGa---GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 113562 0.66 0.925226
Target:  5'- cGCCGGaccGUCuGCGUCUCgGCG-UCCu- -3'
miRNA:   3'- aCGGCU---UAGuCGCGGAG-CGCuAGGuc -5'
10981 5' -56.7 NC_002794.1 + 19414 0.66 0.925226
Target:  5'- -cCCGGAUCGggcGCGCCcuccucCGCGA-CCAGg -3'
miRNA:   3'- acGGCUUAGU---CGCGGa-----GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 110064 0.66 0.914174
Target:  5'- cGUCGGAg-AGCGCggaUCGCGGUCguGa -3'
miRNA:   3'- aCGGCUUagUCGCGg--AGCGCUAGguC- -5'
10981 5' -56.7 NC_002794.1 + 54227 0.66 0.914174
Target:  5'- cGCCGucUCGGaugaagcgGCCgagcgCGCGGUCCAc -3'
miRNA:   3'- aCGGCuuAGUCg-------CGGa----GCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 188019 0.66 0.902206
Target:  5'- cGcCCGucUCGGCGcCCUCGCcGUCcCGGa -3'
miRNA:   3'- aC-GGCuuAGUCGC-GGAGCGcUAG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 120858 0.66 0.902206
Target:  5'- gGCCGucGUcCAGCGCCUCgGCugguGUCCGa -3'
miRNA:   3'- aCGGCu-UA-GUCGCGGAG-CGc---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 186264 0.66 0.907704
Target:  5'- cGaCCGGAUCAcCGCCUggcgcggcggcacCGCGG-CCAGg -3'
miRNA:   3'- aC-GGCUUAGUcGCGGA-------------GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 14642 0.66 0.908303
Target:  5'- gGCaCGGAgacgcCGGCGCCgcggCGuCGGUCCGa -3'
miRNA:   3'- aCG-GCUUa----GUCGCGGa---GC-GCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 120298 0.66 0.908303
Target:  5'- cGCCGAGccCGGgGCCUUGCuguUCCGu -3'
miRNA:   3'- aCGGCUUa-GUCgCGGAGCGcu-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 114742 0.66 0.908303
Target:  5'- cGUCGAGcCGGCGCCgcccgccggCGCcGGUCCu- -3'
miRNA:   3'- aCGGCUUaGUCGCGGa--------GCG-CUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 47938 0.66 0.908303
Target:  5'- cGCa-GAUCGGCGCCgCGCGucCCGGc -3'
miRNA:   3'- aCGgcUUAGUCGCGGaGCGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 126298 0.66 0.908303
Target:  5'- cGCCGc----GCGCCUgGCGGUgCAGc -3'
miRNA:   3'- aCGGCuuaguCGCGGAgCGCUAgGUC- -5'
10981 5' -56.7 NC_002794.1 + 121940 0.66 0.913597
Target:  5'- gGCCGAcgcgcugAUCgAGCGCCUggaGCGcUCCGu -3'
miRNA:   3'- aCGGCU-------UAG-UCGCGGAg--CGCuAGGUc -5'
10981 5' -56.7 NC_002794.1 + 158877 0.66 0.914174
Target:  5'- cGuuGGAaCAGCGUUUCGCG-UUCGGu -3'
miRNA:   3'- aCggCUUaGUCGCGGAGCGCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 695 0.66 0.914174
Target:  5'- gGCCgGAGUCGGCuguuuuuggGCCUcucCGCGAccCCGGg -3'
miRNA:   3'- aCGG-CUUAGUCG---------CGGA---GCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 57431 0.66 0.914174
Target:  5'- gGUCGGcaCGGCGCC-CGUcAUCCAGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGaGCGcUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 116508 0.66 0.914174
Target:  5'- aUGCCGAGgcaGGCGUa--GCcGUCCAGg -3'
miRNA:   3'- -ACGGCUUag-UCGCGgagCGcUAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.