miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 186052 0.66 0.8896
Target:  5'- cCGUCGuuCCCCGGuCCG----UGGCCa -3'
miRNA:   3'- -GCAGCugGGGGCCcGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 117203 0.66 0.8896
Target:  5'- gCGUCGGgCCCgGgcggcuccGGCCGcGUCAgggcGACCg -3'
miRNA:   3'- -GCAGCUgGGGgC--------CCGGC-UAGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 102864 0.66 0.8896
Target:  5'- gCGUgGugCgCCGGGaUCGGUUucUGGCCg -3'
miRNA:   3'- -GCAgCugGgGGCCC-GGCUAGu-ACUGG- -5'
10982 3' -59 NC_002794.1 + 71718 0.66 0.883094
Target:  5'- --gUGAUCUCCGGGUCGu---UGGCCg -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 32511 0.66 0.883094
Target:  5'- uGcCGGCUCCCGccguGCCGGUgAUGAgCa -3'
miRNA:   3'- gCaGCUGGGGGCc---CGGCUAgUACUgG- -5'
10982 3' -59 NC_002794.1 + 134590 0.66 0.883094
Target:  5'- aGagGA-CCUCGGGCCGAcUCcgGAUCc -3'
miRNA:   3'- gCagCUgGGGGCCCGGCU-AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 85432 0.66 0.883094
Target:  5'- --cCGACCCaagagcuuCUGGGCCGcgacaacaaCAUGGCCg -3'
miRNA:   3'- gcaGCUGGG--------GGCCCGGCua-------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 89592 0.66 0.882433
Target:  5'- cCGUCGAgCCgcgcgauCCCGGGUCGGUUucGGCg -3'
miRNA:   3'- -GCAGCU-GG-------GGGCCCGGCUAGuaCUGg -5'
10982 3' -59 NC_002794.1 + 67962 0.66 0.876389
Target:  5'- aCGgcgGGCCCagaCGGGUCGGUCGcuucucGACCu -3'
miRNA:   3'- -GCag-CUGGGg--GCCCGGCUAGUa-----CUGG- -5'
10982 3' -59 NC_002794.1 + 17958 0.66 0.876389
Target:  5'- cCG-CGACUcgCCCGGGCCGugagCcUGGCg -3'
miRNA:   3'- -GCaGCUGG--GGGCCCGGCua--GuACUGg -5'
10982 3' -59 NC_002794.1 + 146789 0.66 0.876389
Target:  5'- cCGU-GACCCCCgcacucGGGUCGuUCGUGGUCg -3'
miRNA:   3'- -GCAgCUGGGGG------CCCGGCuAGUACUGG- -5'
10982 3' -59 NC_002794.1 + 59117 0.66 0.869489
Target:  5'- uCGUCGcgGCCaCCGaGGCCGAcuUCGcgcagGGCCg -3'
miRNA:   3'- -GCAGC--UGGgGGC-CCGGCU--AGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 96849 0.66 0.869489
Target:  5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3'
miRNA:   3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5'
10982 3' -59 NC_002794.1 + 77659 0.66 0.869489
Target:  5'- uGUgCGGCCCgCGGGUCugcggGGUCAUcgucGGCCu -3'
miRNA:   3'- gCA-GCUGGGgGCCCGG-----CUAGUA----CUGG- -5'
10982 3' -59 NC_002794.1 + 101607 0.66 0.869489
Target:  5'- uGcCGGCCCgCCGGGCgGGg-GUG-CCg -3'
miRNA:   3'- gCaGCUGGG-GGCCCGgCUagUACuGG- -5'
10982 3' -59 NC_002794.1 + 120214 0.66 0.869489
Target:  5'- gGUCGcGCCgCCCGuguaccacGCCGAUCAccaGGCCg -3'
miRNA:   3'- gCAGC-UGG-GGGCc-------CGGCUAGUa--CUGG- -5'
10982 3' -59 NC_002794.1 + 75368 0.66 0.862398
Target:  5'- --cCGACCCgCCGcGGCCGG-CGgcggcGGCCu -3'
miRNA:   3'- gcaGCUGGG-GGC-CCGGCUaGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 113925 0.66 0.861679
Target:  5'- gGUCGGCCgCCgaggcgaCGGGCCGcugCcgGGCUu -3'
miRNA:   3'- gCAGCUGG-GG-------GCCCGGCua-GuaCUGG- -5'
10982 3' -59 NC_002794.1 + 32826 0.66 0.861679
Target:  5'- uCGUCGG-CCUCGcGGCCGGcUCAUcgguagcggcagcGGCCg -3'
miRNA:   3'- -GCAGCUgGGGGC-CCGGCU-AGUA-------------CUGG- -5'
10982 3' -59 NC_002794.1 + 131478 0.66 0.858054
Target:  5'- --aCGACCUcgcccguguuaggcaCCGGGCCcGUCAUcacGACCu -3'
miRNA:   3'- gcaGCUGGG---------------GGCCCGGcUAGUA---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.