Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 49147 | 0.68 | 0.773433 |
Target: 5'- uGUCGACCCgaaaccagCGGGCCG-UCcgGgagGCCg -3' miRNA: 3'- gCAGCUGGGg-------GCCCGGCuAGuaC---UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 183159 | 0.68 | 0.764522 |
Target: 5'- aCG-CGGCCgggcugCCCGaGCCGGUCGggGACCg -3' miRNA: 3'- -GCaGCUGG------GGGCcCGGCUAGUa-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 128025 | 0.68 | 0.77166 |
Target: 5'- cCGUCGgcugacACCCCgCGGGCCaccGAUCAccgcgucgcaccGACCg -3' miRNA: 3'- -GCAGC------UGGGG-GCCCGG---CUAGUa-----------CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 63189 | 0.68 | 0.773433 |
Target: 5'- gGUCGcGCUCCUGGGuCUGAcCGUcGACCu -3' miRNA: 3'- gCAGC-UGGGGGCCC-GGCUaGUA-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 104766 | 0.68 | 0.752782 |
Target: 5'- gGUCGGCCCgCCGGcgcuccgacacGCCGAcaggcggugcugcuUCGcgaUGGCCa -3' miRNA: 3'- gCAGCUGGG-GGCC-----------CGGCU--------------AGU---ACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 38707 | 0.68 | 0.755506 |
Target: 5'- cCGUCGAgCgCCCCGGccGCCGAaaugggGACCu -3' miRNA: 3'- -GCAGCU-G-GGGGCC--CGGCUagua--CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 1197 | 0.68 | 0.764522 |
Target: 5'- --cCGGCCauauaaGGGCCGAUCggGGCCc -3' miRNA: 3'- gcaGCUGGggg---CCCGGCUAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 113310 | 0.68 | 0.778726 |
Target: 5'- uCGUCcgcuACCCgCCGGGCCG-UCAgguagcggacgugGGCCu -3' miRNA: 3'- -GCAGc---UGGG-GGCCCGGCuAGUa------------CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 189803 | 0.68 | 0.782231 |
Target: 5'- cCGUCGaACCCCggCGGGCgcgccaCGAUCA--ACCg -3' miRNA: 3'- -GCAGC-UGGGG--GCCCG------GCUAGUacUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 183790 | 0.68 | 0.799458 |
Target: 5'- -cUCGGCCCCCGucaCGAUCAUcGACa -3' miRNA: 3'- gcAGCUGGGGGCccgGCUAGUA-CUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 72874 | 0.68 | 0.799458 |
Target: 5'- -cUCGACUCCUcGGCCGgGUCGcGGCCc -3' miRNA: 3'- gcAGCUGGGGGcCCGGC-UAGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 12897 | 0.68 | 0.799458 |
Target: 5'- --aCGACCCgcucgaCUGGGCCGAguaccgCcUGGCCg -3' miRNA: 3'- gcaGCUGGG------GGCCCGGCUa-----GuACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 83827 | 0.68 | 0.790908 |
Target: 5'- aCGcCGAgCCUCcGGCCGAUCGgucGCCg -3' miRNA: 3'- -GCaGCUgGGGGcCCGGCUAGUac-UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 30084 | 0.68 | 0.790908 |
Target: 5'- gGUCGACgaggCgCGcGGCCGGUCccGACCc -3' miRNA: 3'- gCAGCUGg---GgGC-CCGGCUAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 71794 | 0.68 | 0.790908 |
Target: 5'- aGUCGcCCCCCggcGGGCgCGG-CGaGGCCg -3' miRNA: 3'- gCAGCuGGGGG---CCCG-GCUaGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 114353 | 0.68 | 0.782231 |
Target: 5'- uCGUCcGCCgCCaGGGCCGGcugCAgGGCCg -3' miRNA: 3'- -GCAGcUGGgGG-CCCGGCUa--GUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 90980 | 0.68 | 0.799458 |
Target: 5'- gCGU-GGCCUcguaCCGGGCCGAggCGgagcgGGCCg -3' miRNA: 3'- -GCAgCUGGG----GGCCCGGCUa-GUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 147320 | 0.69 | 0.737189 |
Target: 5'- uCGUgCGGCUCUUcgGGGCCGAucUCGUGcGCCg -3' miRNA: 3'- -GCA-GCUGGGGG--CCCGGCU--AGUAC-UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 146033 | 0.69 | 0.746392 |
Target: 5'- cCGcUCGAUCUCCGGGaCCcGUCGacGACCg -3' miRNA: 3'- -GC-AGCUGGGGGCCC-GGcUAGUa-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 88704 | 0.69 | 0.746392 |
Target: 5'- -cUCGACCgUCgGGGUCGAUUggggcgGUGACCu -3' miRNA: 3'- gcAGCUGG-GGgCCCGGCUAG------UACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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