miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 147320 0.69 0.737189
Target:  5'- uCGUgCGGCUCUUcgGGGCCGAucUCGUGcGCCg -3'
miRNA:   3'- -GCA-GCUGGGGG--CCCGGCU--AGUAC-UGG- -5'
10982 3' -59 NC_002794.1 + 146033 0.69 0.746392
Target:  5'- cCGcUCGAUCUCCGGGaCCcGUCGacGACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCCC-GGcUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 179426 0.69 0.746392
Target:  5'- --cCGGgCCCCGGGCgCGGaggCGUGgACCa -3'
miRNA:   3'- gcaGCUgGGGGCCCG-GCUa--GUAC-UGG- -5'
10982 3' -59 NC_002794.1 + 35034 0.7 0.661267
Target:  5'- --cUGAUCCgCGGGCUGAUggagguccacCAUGACCg -3'
miRNA:   3'- gcaGCUGGGgGCCCGGCUA----------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 134981 0.7 0.661267
Target:  5'- aCGcCG-CCUCCugacggaggGGGCCGA-CGUGACCg -3'
miRNA:   3'- -GCaGCuGGGGG---------CCCGGCUaGUACUGG- -5'
10982 3' -59 NC_002794.1 + 191797 0.7 0.651604
Target:  5'- uCGcUCGACCgCCCGcucGGCCGcUCGagGACCg -3'
miRNA:   3'- -GC-AGCUGG-GGGC---CCGGCuAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 123977 0.7 0.665126
Target:  5'- aCGUCGACCacgCCgUGGcGCCGGUCAUcuacgugaagcgggcGGCCg -3'
miRNA:   3'- -GCAGCUGG---GG-GCC-CGGCUAGUA---------------CUGG- -5'
10982 3' -59 NC_002794.1 + 21578 0.7 0.669946
Target:  5'- uCGUCGugCgcgaCCGGGgCGGUCugugcccGUGACCc -3'
miRNA:   3'- -GCAGCugGg---GGCCCgGCUAG-------UACUGG- -5'
10982 3' -59 NC_002794.1 + 44186 0.7 0.699635
Target:  5'- uCGUCGACUCcgggcgaagCCGGGCCGA-CGUccGGCUc -3'
miRNA:   3'- -GCAGCUGGG---------GGCCCGGCUaGUA--CUGG- -5'
10982 3' -59 NC_002794.1 + 187746 0.7 0.6901
Target:  5'- cCGUCGccaucuccgaacGCCgCCGGcGCCGGUCGccucGACCc -3'
miRNA:   3'- -GCAGC------------UGGgGGCC-CGGCUAGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 189574 0.7 0.680522
Target:  5'- gGUCGGCCggCCCGGGCCGG-C---GCCc -3'
miRNA:   3'- gCAGCUGG--GGGCCCGGCUaGuacUGG- -5'
10982 3' -59 NC_002794.1 + 60286 0.7 0.699635
Target:  5'- cCGUCaACCCCUGGGCCucgCAgaagGGCUc -3'
miRNA:   3'- -GCAGcUGGGGGCCCGGcuaGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 86171 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86363 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86531 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 19265 0.71 0.612883
Target:  5'- cCG-CGGCCCCCGuGGCgCGucUCcUGGCCu -3'
miRNA:   3'- -GCaGCUGGGGGC-CCG-GCu-AGuACUGG- -5'
10982 3' -59 NC_002794.1 + 112292 0.72 0.574365
Target:  5'- uGUCGGgcggcCCCCCGGGuCCGAcuUCGgcGCCg -3'
miRNA:   3'- gCAGCU-----GGGGGCCC-GGCU--AGUacUGG- -5'
10982 3' -59 NC_002794.1 + 147147 0.72 0.564813
Target:  5'- --aCGGCCCCgGGGCCGcgag-GGCCa -3'
miRNA:   3'- gcaGCUGGGGgCCCGGCuaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 106404 0.72 0.574365
Target:  5'- gGUCgGACCCCggCGGcGCCGGggcUCAUGGCg -3'
miRNA:   3'- gCAG-CUGGGG--GCC-CGGCU---AGUACUGg -5'
10982 3' -59 NC_002794.1 + 72685 0.72 0.561956
Target:  5'- aCGUCaggucccuccagggGuCCCCCGGGCCGAccacCGUGcCCa -3'
miRNA:   3'- -GCAG--------------CuGGGGGCCCGGCUa---GUACuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.