miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 86171 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 191797 0.7 0.651604
Target:  5'- uCGcUCGACCgCCCGcucGGCCGcUCGagGACCg -3'
miRNA:   3'- -GC-AGCUGG-GGGC---CCGGCuAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 189574 0.7 0.680522
Target:  5'- gGUCGGCCggCCCGGGCCGG-C---GCCc -3'
miRNA:   3'- gCAGCUGG--GGGCCCGGCUaGuacUGG- -5'
10982 3' -59 NC_002794.1 + 60286 0.7 0.699635
Target:  5'- cCGUCaACCCCUGGGCCucgCAgaagGGCUc -3'
miRNA:   3'- -GCAGcUGGGGGCCCGGcuaGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 123977 0.7 0.665126
Target:  5'- aCGUCGACCacgCCgUGGcGCCGGUCAUcuacgugaagcgggcGGCCg -3'
miRNA:   3'- -GCAGCUGG---GG-GCC-CGGCUAGUA---------------CUGG- -5'
10982 3' -59 NC_002794.1 + 44186 0.7 0.699635
Target:  5'- uCGUCGACUCcgggcgaagCCGGGCCGA-CGUccGGCUc -3'
miRNA:   3'- -GCAGCUGGG---------GGCCCGGCUaGUA--CUGG- -5'
10982 3' -59 NC_002794.1 + 187746 0.7 0.6901
Target:  5'- cCGUCGccaucuccgaacGCCgCCGGcGCCGGUCGccucGACCc -3'
miRNA:   3'- -GCAGC------------UGGgGGCC-CGGCUAGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 35034 0.7 0.661267
Target:  5'- --cUGAUCCgCGGGCUGAUggagguccacCAUGACCg -3'
miRNA:   3'- gcaGCUGGGgGCCCGGCUA----------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 134981 0.7 0.661267
Target:  5'- aCGcCG-CCUCCugacggaggGGGCCGA-CGUGACCg -3'
miRNA:   3'- -GCaGCuGGGGG---------CCCGGCUaGUACUGG- -5'
10982 3' -59 NC_002794.1 + 21578 0.7 0.669946
Target:  5'- uCGUCGugCgcgaCCGGGgCGGUCugugcccGUGACCc -3'
miRNA:   3'- -GCAGCugGg---GGCCCgGCUAG-------UACUGG- -5'
10982 3' -59 NC_002794.1 + 88704 0.69 0.746392
Target:  5'- -cUCGACCgUCgGGGUCGAUUggggcgGUGACCu -3'
miRNA:   3'- gcAGCUGG-GGgCCCGGCUAG------UACUGG- -5'
10982 3' -59 NC_002794.1 + 146033 0.69 0.746392
Target:  5'- cCGcUCGAUCUCCGGGaCCcGUCGacGACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCCC-GGcUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 179426 0.69 0.746392
Target:  5'- --cCGGgCCCCGGGCgCGGaggCGUGgACCa -3'
miRNA:   3'- gcaGCUgGGGGCCCG-GCUa--GUAC-UGG- -5'
10982 3' -59 NC_002794.1 + 147320 0.69 0.737189
Target:  5'- uCGUgCGGCUCUUcgGGGCCGAucUCGUGcGCCg -3'
miRNA:   3'- -GCA-GCUGGGGG--CCCGGCU--AGUAC-UGG- -5'
10982 3' -59 NC_002794.1 + 14767 0.69 0.727904
Target:  5'- cCGUCGagGCCgCUGaGGCCGGcgaggccggCGUGACCg -3'
miRNA:   3'- -GCAGC--UGGgGGC-CCGGCUa--------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 36179 0.69 0.727904
Target:  5'- --cCG-CgCCCCGGGCCGccagCAUGACg -3'
miRNA:   3'- gcaGCuG-GGGGCCCGGCua--GUACUGg -5'
10982 3' -59 NC_002794.1 + 128025 0.68 0.77166
Target:  5'- cCGUCGgcugacACCCCgCGGGCCaccGAUCAccgcgucgcaccGACCg -3'
miRNA:   3'- -GCAGC------UGGGG-GCCCGG---CUAGUa-----------CUGG- -5'
10982 3' -59 NC_002794.1 + 1197 0.68 0.764522
Target:  5'- --cCGGCCauauaaGGGCCGAUCggGGCCc -3'
miRNA:   3'- gcaGCUGGggg---CCCGGCUAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 183159 0.68 0.764522
Target:  5'- aCG-CGGCCgggcugCCCGaGCCGGUCGggGACCg -3'
miRNA:   3'- -GCaGCUGG------GGGCcCGGCUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 104766 0.68 0.752782
Target:  5'- gGUCGGCCCgCCGGcgcuccgacacGCCGAcaggcggugcugcuUCGcgaUGGCCa -3'
miRNA:   3'- gCAGCUGGG-GGCC-----------CGGCU--------------AGU---ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.