Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 52762 | 0.67 | 0.832229 |
Target: 5'- cCG-CG-CCgcggCCCGGGCCgcggGAUCGUGACg -3' miRNA: 3'- -GCaGCuGG----GGGCCCGG----CUAGUACUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 187467 | 0.67 | 0.832229 |
Target: 5'- gCGUCGcucggcGCgCgCCGGGCCGAggaCGaGGCCg -3' miRNA: 3'- -GCAGC------UGgG-GGCCCGGCUa--GUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 148982 | 0.67 | 0.832229 |
Target: 5'- gGcCGACCUCUGGGUgcuCGGUCG-GAUCg -3' miRNA: 3'- gCaGCUGGGGGCCCG---GCUAGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 68934 | 0.67 | 0.832229 |
Target: 5'- uCGUCG-CCCgCGGGCCGcggcgCcgGcGCCu -3' miRNA: 3'- -GCAGCuGGGgGCCCGGCua---GuaC-UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 190007 | 0.67 | 0.807871 |
Target: 5'- -aUCGGCCCguCCGGGUCcAUCGgcGGCCg -3' miRNA: 3'- gcAGCUGGG--GGCCCGGcUAGUa-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 6529 | 0.67 | 0.808705 |
Target: 5'- uGUUGAUggaCCGGGCCGAcgcgguguugcgacaCAUGGCCa -3' miRNA: 3'- gCAGCUGgg-GGCCCGGCUa--------------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 53599 | 0.67 | 0.815322 |
Target: 5'- gCGUCGGCgUCaCCGGGCCGccgcagcGUCGgacgGACg -3' miRNA: 3'- -GCAGCUG-GG-GGCCCGGC-------UAGUa---CUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 108456 | 0.67 | 0.816142 |
Target: 5'- gCGgCGGCCCgccggcaCGGGCCGAggggcGACCg -3' miRNA: 3'- -GCaGCUGGGg------GCCCGGCUagua-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 131421 | 0.67 | 0.816142 |
Target: 5'- -aUCGGCa-CCGGGCCcGUCAUcacGACCu -3' miRNA: 3'- gcAGCUGggGGCCCGGcUAGUA---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 44287 | 0.67 | 0.824264 |
Target: 5'- aGUCcgcGCCCgCCGGGCCGGcgaggCGgggagcGACCg -3' miRNA: 3'- gCAGc--UGGG-GGCCCGGCUa----GUa-----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 35074 | 0.67 | 0.825067 |
Target: 5'- gCGUgGGCgCCCUGGuGCCcGAgaucguggacgucagCGUGACCg -3' miRNA: 3'- -GCAgCUG-GGGGCC-CGG-CUa--------------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 32511 | 0.66 | 0.883094 |
Target: 5'- uGcCGGCUCCCGccguGCCGGUgAUGAgCa -3' miRNA: 3'- gCaGCUGGGGGCc---CGGCUAgUACUgG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 71718 | 0.66 | 0.883094 |
Target: 5'- --gUGAUCUCCGGGUCGu---UGGCCg -3' miRNA: 3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 146789 | 0.66 | 0.876389 |
Target: 5'- cCGU-GACCCCCgcacucGGGUCGuUCGUGGUCg -3' miRNA: 3'- -GCAgCUGGGGG------CCCGGCuAGUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 101607 | 0.66 | 0.869489 |
Target: 5'- uGcCGGCCCgCCGGGCgGGg-GUG-CCg -3' miRNA: 3'- gCaGCUGGG-GGCCCGgCUagUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 77659 | 0.66 | 0.869489 |
Target: 5'- uGUgCGGCCCgCGGGUCugcggGGUCAUcgucGGCCu -3' miRNA: 3'- gCA-GCUGGGgGCCCGG-----CUAGUA----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 96849 | 0.66 | 0.869489 |
Target: 5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3' miRNA: 3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 131478 | 0.66 | 0.858054 |
Target: 5'- --aCGACCUcgcccguguuaggcaCCGGGCCcGUCAUcacGACCu -3' miRNA: 3'- gcaGCUGGG---------------GGCCCGGcUAGUA---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 48613 | 0.66 | 0.855121 |
Target: 5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3' miRNA: 3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 120214 | 0.66 | 0.869489 |
Target: 5'- gGUCGcGCCgCCCGuguaccacGCCGAUCAccaGGCCg -3' miRNA: 3'- gCAGC-UGG-GGGCc-------CGGCUAGUa--CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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