Results 81 - 93 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 120214 | 0.66 | 0.869489 |
Target: 5'- gGUCGcGCCgCCCGuguaccacGCCGAUCAccaGGCCg -3' miRNA: 3'- gCAGC-UGG-GGGCc-------CGGCUAGUa--CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 146789 | 0.66 | 0.876389 |
Target: 5'- cCGU-GACCCCCgcacucGGGUCGuUCGUGGUCg -3' miRNA: 3'- -GCAgCUGGGGG------CCCGGCuAGUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 101607 | 0.66 | 0.869489 |
Target: 5'- uGcCGGCCCgCCGGGCgGGg-GUG-CCg -3' miRNA: 3'- gCaGCUGGG-GGCCCGgCUagUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 48613 | 0.66 | 0.855121 |
Target: 5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3' miRNA: 3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 131478 | 0.66 | 0.858054 |
Target: 5'- --aCGACCUcgcccguguuaggcaCCGGGCCcGUCAUcacGACCu -3' miRNA: 3'- gcaGCUGGG---------------GGCCCGGcUAGUA---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 101265 | 0.66 | 0.855121 |
Target: 5'- gGcCG-CCCCCGGcGCCGGUgGcGGCg -3' miRNA: 3'- gCaGCuGGGGGCC-CGGCUAgUaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 32826 | 0.66 | 0.861679 |
Target: 5'- uCGUCGG-CCUCGcGGCCGGcUCAUcgguagcggcagcGGCCg -3' miRNA: 3'- -GCAGCUgGGGGC-CCGGCU-AGUA-------------CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 59117 | 0.66 | 0.869489 |
Target: 5'- uCGUCGcgGCCaCCGaGGCCGAcuUCGcgcagGGCCg -3' miRNA: 3'- -GCAGC--UGGgGGC-CCGGCU--AGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 75368 | 0.66 | 0.862398 |
Target: 5'- --cCGACCCgCCGcGGCCGG-CGgcggcGGCCu -3' miRNA: 3'- gcaGCUGGG-GGC-CCGGCUaGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 113925 | 0.66 | 0.861679 |
Target: 5'- gGUCGGCCgCCgaggcgaCGGGCCGcugCcgGGCUu -3' miRNA: 3'- gCAGCUGG-GG-------GCCCGGCua-GuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 96849 | 0.66 | 0.869489 |
Target: 5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3' miRNA: 3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 77659 | 0.66 | 0.869489 |
Target: 5'- uGUgCGGCCCgCGGGUCugcggGGUCAUcgucGGCCu -3' miRNA: 3'- gCA-GCUGGGgGCCCGG-----CUAGUA----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 186052 | 0.66 | 0.8896 |
Target: 5'- cCGUCGuuCCCCGGuCCG----UGGCCa -3' miRNA: 3'- -GCAGCugGGGGCCcGGCuaguACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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