miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 10855 0.82 0.157552
Target:  5'- aCGcUCGACCCUCGGaaGCCGAgCGUGACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCC--CGGCUaGUACUGG- -5'
10982 3' -59 NC_002794.1 + 81224 0.8 0.219522
Target:  5'- uCGUCGucCCCCCGGGCCGcgCGcGcACCa -3'
miRNA:   3'- -GCAGCu-GGGGGCCCGGCuaGUaC-UGG- -5'
10982 3' -59 NC_002794.1 + 186948 0.79 0.235258
Target:  5'- --aCGGCCCCCGGGCCGc---UGGCCg -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 150526 0.78 0.281862
Target:  5'- -cUCGGCCCCguagcCGGGCCGGcgcCAUGGCCg -3'
miRNA:   3'- gcAGCUGGGG-----GCCCGGCUa--GUACUGG- -5'
10982 3' -59 NC_002794.1 + 33424 0.77 0.3284
Target:  5'- --aCGACCCUCGGGCUGGUCccggugcagGACCu -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCUAGua-------CUGG- -5'
10982 3' -59 NC_002794.1 + 34795 0.74 0.445286
Target:  5'- aGUCGGCCgaaccggCCCGGGCCGcgCGacACCa -3'
miRNA:   3'- gCAGCUGG-------GGGCCCGGCuaGUacUGG- -5'
10982 3' -59 NC_002794.1 + 129184 0.74 0.454808
Target:  5'- uCGaUCGGCCUCCGGGUCGAc---GACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCCCGGCUaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 76600 0.74 0.460924
Target:  5'- -uUCGACCCgCCGGGUCGucGUCAguagcccuuagacgUGGCCg -3'
miRNA:   3'- gcAGCUGGG-GGCCCGGC--UAGU--------------ACUGG- -5'
10982 3' -59 NC_002794.1 + 120527 0.73 0.48132
Target:  5'- gCGgUGGCCCCCGGGCUGAcCA--GCCu -3'
miRNA:   3'- -GCaGCUGGGGGCCCGGCUaGUacUGG- -5'
10982 3' -59 NC_002794.1 + 129158 0.73 0.508561
Target:  5'- uCG-CGGCCCUCGcGGCCGA---UGGCCg -3'
miRNA:   3'- -GCaGCUGGGGGC-CCGGCUaguACUGG- -5'
10982 3' -59 NC_002794.1 + 51951 0.72 0.545841
Target:  5'- aCGUCcaacaagaaGGCCUCCGGGaCCGGcaUCGUGGCg -3'
miRNA:   3'- -GCAG---------CUGGGGGCCC-GGCU--AGUACUGg -5'
10982 3' -59 NC_002794.1 + 583 0.72 0.555303
Target:  5'- uCGUUuACCCUCGGuCCGuUCGUGGCCg -3'
miRNA:   3'- -GCAGcUGGGGGCCcGGCuAGUACUGG- -5'
10982 3' -59 NC_002794.1 + 72685 0.72 0.561956
Target:  5'- aCGUCaggucccuccagggGuCCCCCGGGCCGAccacCGUGcCCa -3'
miRNA:   3'- -GCAG--------------CuGGGGGCCCGGCUa---GUACuGG- -5'
10982 3' -59 NC_002794.1 + 147147 0.72 0.564813
Target:  5'- --aCGGCCCCgGGGCCGcgag-GGCCa -3'
miRNA:   3'- gcaGCUGGGGgCCCGGCuaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 112292 0.72 0.574365
Target:  5'- uGUCGGgcggcCCCCCGGGuCCGAcuUCGgcGCCg -3'
miRNA:   3'- gCAGCU-----GGGGGCCC-GGCU--AGUacUGG- -5'
10982 3' -59 NC_002794.1 + 106404 0.72 0.574365
Target:  5'- gGUCgGACCCCggCGGcGCCGGggcUCAUGGCg -3'
miRNA:   3'- gCAG-CUGGGG--GCC-CGGCU---AGUACUGg -5'
10982 3' -59 NC_002794.1 + 64307 0.72 0.583954
Target:  5'- cCGUCGugCuccgccaccacCCCGGGCCGuUUuUGGCCc -3'
miRNA:   3'- -GCAGCugG-----------GGGCCCGGCuAGuACUGG- -5'
10982 3' -59 NC_002794.1 + 86363 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86171 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86531 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.