miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 128025 0.68 0.77166
Target:  5'- cCGUCGgcugacACCCCgCGGGCCaccGAUCAccgcgucgcaccGACCg -3'
miRNA:   3'- -GCAGC------UGGGG-GCCCGG---CUAGUa-----------CUGG- -5'
10982 3' -59 NC_002794.1 + 63189 0.68 0.773433
Target:  5'- gGUCGcGCUCCUGGGuCUGAcCGUcGACCu -3'
miRNA:   3'- gCAGC-UGGGGGCCC-GGCUaGUA-CUGG- -5'
10982 3' -59 NC_002794.1 + 49147 0.68 0.773433
Target:  5'- uGUCGACCCgaaaccagCGGGCCG-UCcgGgagGCCg -3'
miRNA:   3'- gCAGCUGGGg-------GCCCGGCuAGuaC---UGG- -5'
10982 3' -59 NC_002794.1 + 113310 0.68 0.778726
Target:  5'- uCGUCcgcuACCCgCCGGGCCG-UCAgguagcggacgugGGCCu -3'
miRNA:   3'- -GCAGc---UGGG-GGCCCGGCuAGUa------------CUGG- -5'
10982 3' -59 NC_002794.1 + 49699 0.68 0.782231
Target:  5'- gCGUCGGCacgacgacucgCCCCGGGCa-GUCGagccaGACCg -3'
miRNA:   3'- -GCAGCUG-----------GGGGCCCGgcUAGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 189803 0.68 0.782231
Target:  5'- cCGUCGaACCCCggCGGGCgcgccaCGAUCA--ACCg -3'
miRNA:   3'- -GCAGC-UGGGG--GCCCG------GCUAGUacUGG- -5'
10982 3' -59 NC_002794.1 + 114353 0.68 0.782231
Target:  5'- uCGUCcGCCgCCaGGGCCGGcugCAgGGCCg -3'
miRNA:   3'- -GCAGcUGGgGG-CCCGGCUa--GUaCUGG- -5'
10982 3' -59 NC_002794.1 + 71794 0.68 0.790908
Target:  5'- aGUCGcCCCCCggcGGGCgCGG-CGaGGCCg -3'
miRNA:   3'- gCAGCuGGGGG---CCCG-GCUaGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 83827 0.68 0.790908
Target:  5'- aCGcCGAgCCUCcGGCCGAUCGgucGCCg -3'
miRNA:   3'- -GCaGCUgGGGGcCCGGCUAGUac-UGG- -5'
10982 3' -59 NC_002794.1 + 30084 0.68 0.790908
Target:  5'- gGUCGACgaggCgCGcGGCCGGUCccGACCc -3'
miRNA:   3'- gCAGCUGg---GgGC-CCGGCUAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 12897 0.68 0.799458
Target:  5'- --aCGACCCgcucgaCUGGGCCGAguaccgCcUGGCCg -3'
miRNA:   3'- gcaGCUGGG------GGCCCGGCUa-----GuACUGG- -5'
10982 3' -59 NC_002794.1 + 90980 0.68 0.799458
Target:  5'- gCGU-GGCCUcguaCCGGGCCGAggCGgagcgGGCCg -3'
miRNA:   3'- -GCAgCUGGG----GGCCCGGCUa-GUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 183790 0.68 0.799458
Target:  5'- -cUCGGCCCCCGucaCGAUCAUcGACa -3'
miRNA:   3'- gcAGCUGGGGGCccgGCUAGUA-CUGg -5'
10982 3' -59 NC_002794.1 + 72874 0.68 0.799458
Target:  5'- -cUCGACUCCUcGGCCGgGUCGcGGCCc -3'
miRNA:   3'- gcAGCUGGGGGcCCGGC-UAGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 190007 0.67 0.807871
Target:  5'- -aUCGGCCCguCCGGGUCcAUCGgcGGCCg -3'
miRNA:   3'- gcAGCUGGG--GGCCCGGcUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 6529 0.67 0.808705
Target:  5'- uGUUGAUggaCCGGGCCGAcgcgguguugcgacaCAUGGCCa -3'
miRNA:   3'- gCAGCUGgg-GGCCCGGCUa--------------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 53599 0.67 0.815322
Target:  5'- gCGUCGGCgUCaCCGGGCCGccgcagcGUCGgacgGACg -3'
miRNA:   3'- -GCAGCUG-GG-GGCCCGGC-------UAGUa---CUGg -5'
10982 3' -59 NC_002794.1 + 108456 0.67 0.816142
Target:  5'- gCGgCGGCCCgccggcaCGGGCCGAggggcGACCg -3'
miRNA:   3'- -GCaGCUGGGg------GCCCGGCUagua-CUGG- -5'
10982 3' -59 NC_002794.1 + 131421 0.67 0.816142
Target:  5'- -aUCGGCa-CCGGGCCcGUCAUcacGACCu -3'
miRNA:   3'- gcAGCUGggGGCCCGGcUAGUA---CUGG- -5'
10982 3' -59 NC_002794.1 + 44287 0.67 0.824264
Target:  5'- aGUCcgcGCCCgCCGGGCCGGcgaggCGgggagcGACCg -3'
miRNA:   3'- gCAGc--UGGG-GGCCCGGCUa----GUa-----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.