miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 101265 0.66 0.855121
Target:  5'- gGcCG-CCCCCGGcGCCGGUgGcGGCg -3'
miRNA:   3'- gCaGCuGGGGGCC-CGGCUAgUaCUGg -5'
10982 3' -59 NC_002794.1 + 48613 0.66 0.855121
Target:  5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3'
miRNA:   3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 56264 0.67 0.847664
Target:  5'- --aCGGCCaCCGGGCCGAgcagCA-GGCg -3'
miRNA:   3'- gcaGCUGGgGGCCCGGCUa---GUaCUGg -5'
10982 3' -59 NC_002794.1 + 109520 0.67 0.845392
Target:  5'- --cCGGCCCgcgcucguucggcgUCGGGCCGggCG-GACCg -3'
miRNA:   3'- gcaGCUGGG--------------GGCCCGGCuaGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 43029 0.67 0.840031
Target:  5'- uCGUCGGCCUCCaucgcgcggcaGGCCGAgcc-GGCCa -3'
miRNA:   3'- -GCAGCUGGGGGc----------CCGGCUaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 152411 0.67 0.840031
Target:  5'- uCGcCGACCugcugcCCCGGGCCGucuGUCGgcagcugGGCUa -3'
miRNA:   3'- -GCaGCUGG------GGGCCCGGC---UAGUa------CUGG- -5'
10982 3' -59 NC_002794.1 + 114741 0.67 0.840031
Target:  5'- uCGUCGagccggcgccGCCCgCCGGcGCCGGUCcucGGCg -3'
miRNA:   3'- -GCAGC----------UGGG-GGCC-CGGCUAGua-CUGg -5'
10982 3' -59 NC_002794.1 + 52762 0.67 0.832229
Target:  5'- cCG-CG-CCgcggCCCGGGCCgcggGAUCGUGACg -3'
miRNA:   3'- -GCaGCuGG----GGGCCCGG----CUAGUACUGg -5'
10982 3' -59 NC_002794.1 + 187467 0.67 0.832229
Target:  5'- gCGUCGcucggcGCgCgCCGGGCCGAggaCGaGGCCg -3'
miRNA:   3'- -GCAGC------UGgG-GGCCCGGCUa--GUaCUGG- -5'
10982 3' -59 NC_002794.1 + 148982 0.67 0.832229
Target:  5'- gGcCGACCUCUGGGUgcuCGGUCG-GAUCg -3'
miRNA:   3'- gCaGCUGGGGGCCCG---GCUAGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 68934 0.67 0.832229
Target:  5'- uCGUCG-CCCgCGGGCCGcggcgCcgGcGCCu -3'
miRNA:   3'- -GCAGCuGGGgGCCCGGCua---GuaC-UGG- -5'
10982 3' -59 NC_002794.1 + 123262 0.67 0.831439
Target:  5'- uCGcCGGCUggUCCGGGCCGcgGUCGUcgcgggaGACCu -3'
miRNA:   3'- -GCaGCUGG--GGGCCCGGC--UAGUA-------CUGG- -5'
10982 3' -59 NC_002794.1 + 35074 0.67 0.825067
Target:  5'- gCGUgGGCgCCCUGGuGCCcGAgaucguggacgucagCGUGACCg -3'
miRNA:   3'- -GCAgCUG-GGGGCC-CGG-CUa--------------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 44287 0.67 0.824264
Target:  5'- aGUCcgcGCCCgCCGGGCCGGcgaggCGgggagcGACCg -3'
miRNA:   3'- gCAGc--UGGG-GGCCCGGCUa----GUa-----CUGG- -5'
10982 3' -59 NC_002794.1 + 131421 0.67 0.816142
Target:  5'- -aUCGGCa-CCGGGCCcGUCAUcacGACCu -3'
miRNA:   3'- gcAGCUGggGGCCCGGcUAGUA---CUGG- -5'
10982 3' -59 NC_002794.1 + 108456 0.67 0.816142
Target:  5'- gCGgCGGCCCgccggcaCGGGCCGAggggcGACCg -3'
miRNA:   3'- -GCaGCUGGGg------GCCCGGCUagua-CUGG- -5'
10982 3' -59 NC_002794.1 + 53599 0.67 0.815322
Target:  5'- gCGUCGGCgUCaCCGGGCCGccgcagcGUCGgacgGACg -3'
miRNA:   3'- -GCAGCUG-GG-GGCCCGGC-------UAGUa---CUGg -5'
10982 3' -59 NC_002794.1 + 6529 0.67 0.808705
Target:  5'- uGUUGAUggaCCGGGCCGAcgcgguguugcgacaCAUGGCCa -3'
miRNA:   3'- gCAGCUGgg-GGCCCGGCUa--------------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 190007 0.67 0.807871
Target:  5'- -aUCGGCCCguCCGGGUCcAUCGgcGGCCg -3'
miRNA:   3'- gcAGCUGGG--GGCCCGGcUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 183790 0.68 0.799458
Target:  5'- -cUCGGCCCCCGucaCGAUCAUcGACa -3'
miRNA:   3'- gcAGCUGGGGGCccgGCUAGUA-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.