miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 583 0.72 0.555303
Target:  5'- uCGUUuACCCUCGGuCCGuUCGUGGCCg -3'
miRNA:   3'- -GCAGcUGGGGGCCcGGCuAGUACUGG- -5'
10982 3' -59 NC_002794.1 + 1197 0.68 0.764522
Target:  5'- --cCGGCCauauaaGGGCCGAUCggGGCCc -3'
miRNA:   3'- gcaGCUGGggg---CCCGGCUAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 6529 0.67 0.808705
Target:  5'- uGUUGAUggaCCGGGCCGAcgcgguguugcgacaCAUGGCCa -3'
miRNA:   3'- gCAGCUGgg-GGCCCGGCUa--------------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 10855 0.82 0.157552
Target:  5'- aCGcUCGACCCUCGGaaGCCGAgCGUGACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCC--CGGCUaGUACUGG- -5'
10982 3' -59 NC_002794.1 + 12897 0.68 0.799458
Target:  5'- --aCGACCCgcucgaCUGGGCCGAguaccgCcUGGCCg -3'
miRNA:   3'- gcaGCUGGG------GGCCCGGCUa-----GuACUGG- -5'
10982 3' -59 NC_002794.1 + 14767 0.69 0.727904
Target:  5'- cCGUCGagGCCgCUGaGGCCGGcgaggccggCGUGACCg -3'
miRNA:   3'- -GCAGC--UGGgGGC-CCGGCUa--------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 17958 0.66 0.876389
Target:  5'- cCG-CGACUcgCCCGGGCCGugagCcUGGCg -3'
miRNA:   3'- -GCaGCUGG--GGGCCCGGCua--GuACUGg -5'
10982 3' -59 NC_002794.1 + 19265 0.71 0.612883
Target:  5'- cCG-CGGCCCCCGuGGCgCGucUCcUGGCCu -3'
miRNA:   3'- -GCaGCUGGGGGC-CCG-GCu-AGuACUGG- -5'
10982 3' -59 NC_002794.1 + 21578 0.7 0.669946
Target:  5'- uCGUCGugCgcgaCCGGGgCGGUCugugcccGUGACCc -3'
miRNA:   3'- -GCAGCugGg---GGCCCgGCUAG-------UACUGG- -5'
10982 3' -59 NC_002794.1 + 30084 0.68 0.790908
Target:  5'- gGUCGACgaggCgCGcGGCCGGUCccGACCc -3'
miRNA:   3'- gCAGCUGg---GgGC-CCGGCUAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 32511 0.66 0.883094
Target:  5'- uGcCGGCUCCCGccguGCCGGUgAUGAgCa -3'
miRNA:   3'- gCaGCUGGGGGCc---CGGCUAgUACUgG- -5'
10982 3' -59 NC_002794.1 + 32826 0.66 0.861679
Target:  5'- uCGUCGG-CCUCGcGGCCGGcUCAUcgguagcggcagcGGCCg -3'
miRNA:   3'- -GCAGCUgGGGGC-CCGGCU-AGUA-------------CUGG- -5'
10982 3' -59 NC_002794.1 + 33424 0.77 0.3284
Target:  5'- --aCGACCCUCGGGCUGGUCccggugcagGACCu -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCUAGua-------CUGG- -5'
10982 3' -59 NC_002794.1 + 34795 0.74 0.445286
Target:  5'- aGUCGGCCgaaccggCCCGGGCCGcgCGacACCa -3'
miRNA:   3'- gCAGCUGG-------GGGCCCGGCuaGUacUGG- -5'
10982 3' -59 NC_002794.1 + 35034 0.7 0.661267
Target:  5'- --cUGAUCCgCGGGCUGAUggagguccacCAUGACCg -3'
miRNA:   3'- gcaGCUGGGgGCCCGGCUA----------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 35074 0.67 0.825067
Target:  5'- gCGUgGGCgCCCUGGuGCCcGAgaucguggacgucagCGUGACCg -3'
miRNA:   3'- -GCAgCUG-GGGGCC-CGG-CUa--------------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 36179 0.69 0.727904
Target:  5'- --cCG-CgCCCCGGGCCGccagCAUGACg -3'
miRNA:   3'- gcaGCuG-GGGGCCCGGCua--GUACUGg -5'
10982 3' -59 NC_002794.1 + 38707 0.68 0.755506
Target:  5'- cCGUCGAgCgCCCCGGccGCCGAaaugggGACCu -3'
miRNA:   3'- -GCAGCU-G-GGGGCC--CGGCUagua--CUGG- -5'
10982 3' -59 NC_002794.1 + 43029 0.67 0.840031
Target:  5'- uCGUCGGCCUCCaucgcgcggcaGGCCGAgcc-GGCCa -3'
miRNA:   3'- -GCAGCUGGGGGc----------CCGGCUaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 44186 0.7 0.699635
Target:  5'- uCGUCGACUCcgggcgaagCCGGGCCGA-CGUccGGCUc -3'
miRNA:   3'- -GCAGCUGGG---------GGCCCGGCUaGUA--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.