miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 44287 0.67 0.824264
Target:  5'- aGUCcgcGCCCgCCGGGCCGGcgaggCGgggagcGACCg -3'
miRNA:   3'- gCAGc--UGGG-GGCCCGGCUa----GUa-----CUGG- -5'
10982 3' -59 NC_002794.1 + 48613 0.66 0.855121
Target:  5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3'
miRNA:   3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 49147 0.68 0.773433
Target:  5'- uGUCGACCCgaaaccagCGGGCCG-UCcgGgagGCCg -3'
miRNA:   3'- gCAGCUGGGg-------GCCCGGCuAGuaC---UGG- -5'
10982 3' -59 NC_002794.1 + 49699 0.68 0.782231
Target:  5'- gCGUCGGCacgacgacucgCCCCGGGCa-GUCGagccaGACCg -3'
miRNA:   3'- -GCAGCUG-----------GGGGCCCGgcUAGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 51951 0.72 0.545841
Target:  5'- aCGUCcaacaagaaGGCCUCCGGGaCCGGcaUCGUGGCg -3'
miRNA:   3'- -GCAG---------CUGGGGGCCC-GGCU--AGUACUGg -5'
10982 3' -59 NC_002794.1 + 52762 0.67 0.832229
Target:  5'- cCG-CG-CCgcggCCCGGGCCgcggGAUCGUGACg -3'
miRNA:   3'- -GCaGCuGG----GGGCCCGG----CUAGUACUGg -5'
10982 3' -59 NC_002794.1 + 53599 0.67 0.815322
Target:  5'- gCGUCGGCgUCaCCGGGCCGccgcagcGUCGgacgGACg -3'
miRNA:   3'- -GCAGCUG-GG-GGCCCGGC-------UAGUa---CUGg -5'
10982 3' -59 NC_002794.1 + 56264 0.67 0.847664
Target:  5'- --aCGGCCaCCGGGCCGAgcagCA-GGCg -3'
miRNA:   3'- gcaGCUGGgGGCCCGGCUa---GUaCUGg -5'
10982 3' -59 NC_002794.1 + 59117 0.66 0.869489
Target:  5'- uCGUCGcgGCCaCCGaGGCCGAcuUCGcgcagGGCCg -3'
miRNA:   3'- -GCAGC--UGGgGGC-CCGGCU--AGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 60286 0.7 0.699635
Target:  5'- cCGUCaACCCCUGGGCCucgCAgaagGGCUc -3'
miRNA:   3'- -GCAGcUGGGGGCCCGGcuaGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 63189 0.68 0.773433
Target:  5'- gGUCGcGCUCCUGGGuCUGAcCGUcGACCu -3'
miRNA:   3'- gCAGC-UGGGGGCCC-GGCUaGUA-CUGG- -5'
10982 3' -59 NC_002794.1 + 64307 0.72 0.583954
Target:  5'- cCGUCGugCuccgccaccacCCCGGGCCGuUUuUGGCCc -3'
miRNA:   3'- -GCAGCugG-----------GGGCCCGGCuAGuACUGG- -5'
10982 3' -59 NC_002794.1 + 67962 0.66 0.876389
Target:  5'- aCGgcgGGCCCagaCGGGUCGGUCGcuucucGACCu -3'
miRNA:   3'- -GCag-CUGGGg--GCCCGGCUAGUa-----CUGG- -5'
10982 3' -59 NC_002794.1 + 68934 0.67 0.832229
Target:  5'- uCGUCG-CCCgCGGGCCGcggcgCcgGcGCCu -3'
miRNA:   3'- -GCAGCuGGGgGCCCGGCua---GuaC-UGG- -5'
10982 3' -59 NC_002794.1 + 71718 0.66 0.883094
Target:  5'- --gUGAUCUCCGGGUCGu---UGGCCg -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 71794 0.68 0.790908
Target:  5'- aGUCGcCCCCCggcGGGCgCGG-CGaGGCCg -3'
miRNA:   3'- gCAGCuGGGGG---CCCG-GCUaGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 72685 0.72 0.561956
Target:  5'- aCGUCaggucccuccagggGuCCCCCGGGCCGAccacCGUGcCCa -3'
miRNA:   3'- -GCAG--------------CuGGGGGCCCGGCUa---GUACuGG- -5'
10982 3' -59 NC_002794.1 + 72874 0.68 0.799458
Target:  5'- -cUCGACUCCUcGGCCGgGUCGcGGCCc -3'
miRNA:   3'- gcAGCUGGGGGcCCGGC-UAGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 75368 0.66 0.862398
Target:  5'- --cCGACCCgCCGcGGCCGG-CGgcggcGGCCu -3'
miRNA:   3'- gcaGCUGGG-GGC-CCGGCUaGUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 76600 0.74 0.460924
Target:  5'- -uUCGACCCgCCGGGUCGucGUCAguagcccuuagacgUGGCCg -3'
miRNA:   3'- gcAGCUGGG-GGCCCGGC--UAGU--------------ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.