miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 77659 0.66 0.869489
Target:  5'- uGUgCGGCCCgCGGGUCugcggGGUCAUcgucGGCCu -3'
miRNA:   3'- gCA-GCUGGGgGCCCGG-----CUAGUA----CUGG- -5'
10982 3' -59 NC_002794.1 + 81224 0.8 0.219522
Target:  5'- uCGUCGucCCCCCGGGCCGcgCGcGcACCa -3'
miRNA:   3'- -GCAGCu-GGGGGCCCGGCuaGUaC-UGG- -5'
10982 3' -59 NC_002794.1 + 83827 0.68 0.790908
Target:  5'- aCGcCGAgCCUCcGGCCGAUCGgucGCCg -3'
miRNA:   3'- -GCaGCUgGGGGcCCGGCUAGUac-UGG- -5'
10982 3' -59 NC_002794.1 + 85432 0.66 0.883094
Target:  5'- --cCGACCCaagagcuuCUGGGCCGcgacaacaaCAUGGCCg -3'
miRNA:   3'- gcaGCUGGG--------GGCCCGGCua-------GUACUGG- -5'
10982 3' -59 NC_002794.1 + 86171 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86363 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 86531 0.71 0.590685
Target:  5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3'
miRNA:   3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5'
10982 3' -59 NC_002794.1 + 88704 0.69 0.746392
Target:  5'- -cUCGACCgUCgGGGUCGAUUggggcgGUGACCu -3'
miRNA:   3'- gcAGCUGG-GGgCCCGGCUAG------UACUGG- -5'
10982 3' -59 NC_002794.1 + 89592 0.66 0.882433
Target:  5'- cCGUCGAgCCgcgcgauCCCGGGUCGGUUucGGCg -3'
miRNA:   3'- -GCAGCU-GG-------GGGCCCGGCUAGuaCUGg -5'
10982 3' -59 NC_002794.1 + 90980 0.68 0.799458
Target:  5'- gCGU-GGCCUcguaCCGGGCCGAggCGgagcgGGCCg -3'
miRNA:   3'- -GCAgCUGGG----GGCCCGGCUa-GUa----CUGG- -5'
10982 3' -59 NC_002794.1 + 96849 0.66 0.869489
Target:  5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3'
miRNA:   3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5'
10982 3' -59 NC_002794.1 + 101265 0.66 0.855121
Target:  5'- gGcCG-CCCCCGGcGCCGGUgGcGGCg -3'
miRNA:   3'- gCaGCuGGGGGCC-CGGCUAgUaCUGg -5'
10982 3' -59 NC_002794.1 + 101607 0.66 0.869489
Target:  5'- uGcCGGCCCgCCGGGCgGGg-GUG-CCg -3'
miRNA:   3'- gCaGCUGGG-GGCCCGgCUagUACuGG- -5'
10982 3' -59 NC_002794.1 + 102864 0.66 0.8896
Target:  5'- gCGUgGugCgCCGGGaUCGGUUucUGGCCg -3'
miRNA:   3'- -GCAgCugGgGGCCC-GGCUAGu-ACUGG- -5'
10982 3' -59 NC_002794.1 + 104766 0.68 0.752782
Target:  5'- gGUCGGCCCgCCGGcgcuccgacacGCCGAcaggcggugcugcuUCGcgaUGGCCa -3'
miRNA:   3'- gCAGCUGGG-GGCC-----------CGGCU--------------AGU---ACUGG- -5'
10982 3' -59 NC_002794.1 + 106404 0.72 0.574365
Target:  5'- gGUCgGACCCCggCGGcGCCGGggcUCAUGGCg -3'
miRNA:   3'- gCAG-CUGGGG--GCC-CGGCU---AGUACUGg -5'
10982 3' -59 NC_002794.1 + 108456 0.67 0.816142
Target:  5'- gCGgCGGCCCgccggcaCGGGCCGAggggcGACCg -3'
miRNA:   3'- -GCaGCUGGGg------GCCCGGCUagua-CUGG- -5'
10982 3' -59 NC_002794.1 + 109520 0.67 0.845392
Target:  5'- --cCGGCCCgcgcucguucggcgUCGGGCCGggCG-GACCg -3'
miRNA:   3'- gcaGCUGGG--------------GGCCCGGCuaGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 112292 0.72 0.574365
Target:  5'- uGUCGGgcggcCCCCCGGGuCCGAcuUCGgcGCCg -3'
miRNA:   3'- gCAGCU-----GGGGGCCC-GGCU--AGUacUGG- -5'
10982 3' -59 NC_002794.1 + 113310 0.68 0.778726
Target:  5'- uCGUCcgcuACCCgCCGGGCCG-UCAgguagcggacgugGGCCu -3'
miRNA:   3'- -GCAGc---UGGG-GGCCCGGCuAGUa------------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.