miRNA display CGI


Results 81 - 93 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 150526 0.78 0.281862
Target:  5'- -cUCGGCCCCguagcCGGGCCGGcgcCAUGGCCg -3'
miRNA:   3'- gcAGCUGGGG-----GCCCGGCUa--GUACUGG- -5'
10982 3' -59 NC_002794.1 + 152411 0.67 0.840031
Target:  5'- uCGcCGACCugcugcCCCGGGCCGucuGUCGgcagcugGGCUa -3'
miRNA:   3'- -GCaGCUGG------GGGCCCGGC---UAGUa------CUGG- -5'
10982 3' -59 NC_002794.1 + 179426 0.69 0.746392
Target:  5'- --cCGGgCCCCGGGCgCGGaggCGUGgACCa -3'
miRNA:   3'- gcaGCUgGGGGCCCG-GCUa--GUAC-UGG- -5'
10982 3' -59 NC_002794.1 + 183159 0.68 0.764522
Target:  5'- aCG-CGGCCgggcugCCCGaGCCGGUCGggGACCg -3'
miRNA:   3'- -GCaGCUGG------GGGCcCGGCUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 183790 0.68 0.799458
Target:  5'- -cUCGGCCCCCGucaCGAUCAUcGACa -3'
miRNA:   3'- gcAGCUGGGGGCccgGCUAGUA-CUGg -5'
10982 3' -59 NC_002794.1 + 186052 0.66 0.8896
Target:  5'- cCGUCGuuCCCCGGuCCG----UGGCCa -3'
miRNA:   3'- -GCAGCugGGGGCCcGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 186948 0.79 0.235258
Target:  5'- --aCGGCCCCCGGGCCGc---UGGCCg -3'
miRNA:   3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5'
10982 3' -59 NC_002794.1 + 187467 0.67 0.832229
Target:  5'- gCGUCGcucggcGCgCgCCGGGCCGAggaCGaGGCCg -3'
miRNA:   3'- -GCAGC------UGgG-GGCCCGGCUa--GUaCUGG- -5'
10982 3' -59 NC_002794.1 + 187746 0.7 0.6901
Target:  5'- cCGUCGccaucuccgaacGCCgCCGGcGCCGGUCGccucGACCc -3'
miRNA:   3'- -GCAGC------------UGGgGGCC-CGGCUAGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 189574 0.7 0.680522
Target:  5'- gGUCGGCCggCCCGGGCCGG-C---GCCc -3'
miRNA:   3'- gCAGCUGG--GGGCCCGGCUaGuacUGG- -5'
10982 3' -59 NC_002794.1 + 189803 0.68 0.782231
Target:  5'- cCGUCGaACCCCggCGGGCgcgccaCGAUCA--ACCg -3'
miRNA:   3'- -GCAGC-UGGGG--GCCCG------GCUAGUacUGG- -5'
10982 3' -59 NC_002794.1 + 190007 0.67 0.807871
Target:  5'- -aUCGGCCCguCCGGGUCcAUCGgcGGCCg -3'
miRNA:   3'- gcAGCUGGG--GGCCCGGcUAGUa-CUGG- -5'
10982 3' -59 NC_002794.1 + 191797 0.7 0.651604
Target:  5'- uCGcUCGACCgCCCGcucGGCCGcUCGagGACCg -3'
miRNA:   3'- -GC-AGCUGG-GGGC---CCGGCuAGUa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.