miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 3' -59 NC_002794.1 + 131478 0.66 0.858054
Target:  5'- --aCGACCUcgcccguguuaggcaCCGGGCCcGUCAUcacGACCu -3'
miRNA:   3'- gcaGCUGGG---------------GGCCCGGcUAGUA---CUGG- -5'
10982 3' -59 NC_002794.1 + 131421 0.67 0.816142
Target:  5'- -aUCGGCa-CCGGGCCcGUCAUcacGACCu -3'
miRNA:   3'- gcAGCUGggGGCCCGGcUAGUA---CUGG- -5'
10982 3' -59 NC_002794.1 + 129184 0.74 0.454808
Target:  5'- uCGaUCGGCCUCCGGGUCGAc---GACCg -3'
miRNA:   3'- -GC-AGCUGGGGGCCCGGCUaguaCUGG- -5'
10982 3' -59 NC_002794.1 + 129158 0.73 0.508561
Target:  5'- uCG-CGGCCCUCGcGGCCGA---UGGCCg -3'
miRNA:   3'- -GCaGCUGGGGGC-CCGGCUaguACUGG- -5'
10982 3' -59 NC_002794.1 + 128025 0.68 0.77166
Target:  5'- cCGUCGgcugacACCCCgCGGGCCaccGAUCAccgcgucgcaccGACCg -3'
miRNA:   3'- -GCAGC------UGGGG-GCCCGG---CUAGUa-----------CUGG- -5'
10982 3' -59 NC_002794.1 + 123977 0.7 0.665126
Target:  5'- aCGUCGACCacgCCgUGGcGCCGGUCAUcuacgugaagcgggcGGCCg -3'
miRNA:   3'- -GCAGCUGG---GG-GCC-CGGCUAGUA---------------CUGG- -5'
10982 3' -59 NC_002794.1 + 123262 0.67 0.831439
Target:  5'- uCGcCGGCUggUCCGGGCCGcgGUCGUcgcgggaGACCu -3'
miRNA:   3'- -GCaGCUGG--GGGCCCGGC--UAGUA-------CUGG- -5'
10982 3' -59 NC_002794.1 + 120527 0.73 0.48132
Target:  5'- gCGgUGGCCCCCGGGCUGAcCA--GCCu -3'
miRNA:   3'- -GCaGCUGGGGGCCCGGCUaGUacUGG- -5'
10982 3' -59 NC_002794.1 + 120214 0.66 0.869489
Target:  5'- gGUCGcGCCgCCCGuguaccacGCCGAUCAccaGGCCg -3'
miRNA:   3'- gCAGC-UGG-GGGCc-------CGGCUAGUa--CUGG- -5'
10982 3' -59 NC_002794.1 + 117203 0.66 0.8896
Target:  5'- gCGUCGGgCCCgGgcggcuccGGCCGcGUCAgggcGACCg -3'
miRNA:   3'- -GCAGCUgGGGgC--------CCGGC-UAGUa---CUGG- -5'
10982 3' -59 NC_002794.1 + 114741 0.67 0.840031
Target:  5'- uCGUCGagccggcgccGCCCgCCGGcGCCGGUCcucGGCg -3'
miRNA:   3'- -GCAGC----------UGGG-GGCC-CGGCUAGua-CUGg -5'
10982 3' -59 NC_002794.1 + 114353 0.68 0.782231
Target:  5'- uCGUCcGCCgCCaGGGCCGGcugCAgGGCCg -3'
miRNA:   3'- -GCAGcUGGgGG-CCCGGCUa--GUaCUGG- -5'
10982 3' -59 NC_002794.1 + 113925 0.66 0.861679
Target:  5'- gGUCGGCCgCCgaggcgaCGGGCCGcugCcgGGCUu -3'
miRNA:   3'- gCAGCUGG-GG-------GCCCGGCua-GuaCUGG- -5'
10982 3' -59 NC_002794.1 + 113310 0.68 0.778726
Target:  5'- uCGUCcgcuACCCgCCGGGCCG-UCAgguagcggacgugGGCCu -3'
miRNA:   3'- -GCAGc---UGGG-GGCCCGGCuAGUa------------CUGG- -5'
10982 3' -59 NC_002794.1 + 112292 0.72 0.574365
Target:  5'- uGUCGGgcggcCCCCCGGGuCCGAcuUCGgcGCCg -3'
miRNA:   3'- gCAGCU-----GGGGGCCC-GGCU--AGUacUGG- -5'
10982 3' -59 NC_002794.1 + 109520 0.67 0.845392
Target:  5'- --cCGGCCCgcgcucguucggcgUCGGGCCGggCG-GACCg -3'
miRNA:   3'- gcaGCUGGG--------------GGCCCGGCuaGUaCUGG- -5'
10982 3' -59 NC_002794.1 + 108456 0.67 0.816142
Target:  5'- gCGgCGGCCCgccggcaCGGGCCGAggggcGACCg -3'
miRNA:   3'- -GCaGCUGGGg------GCCCGGCUagua-CUGG- -5'
10982 3' -59 NC_002794.1 + 106404 0.72 0.574365
Target:  5'- gGUCgGACCCCggCGGcGCCGGggcUCAUGGCg -3'
miRNA:   3'- gCAG-CUGGGG--GCC-CGGCU---AGUACUGg -5'
10982 3' -59 NC_002794.1 + 104766 0.68 0.752782
Target:  5'- gGUCGGCCCgCCGGcgcuccgacacGCCGAcaggcggugcugcuUCGcgaUGGCCa -3'
miRNA:   3'- gCAGCUGGG-GGCC-----------CGGCU--------------AGU---ACUGG- -5'
10982 3' -59 NC_002794.1 + 102864 0.66 0.8896
Target:  5'- gCGUgGugCgCCGGGaUCGGUUucUGGCCg -3'
miRNA:   3'- -GCAgCugGgGGCCC-GGCUAGu-ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.