Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 101607 | 0.66 | 0.869489 |
Target: 5'- uGcCGGCCCgCCGGGCgGGg-GUG-CCg -3' miRNA: 3'- gCaGCUGGG-GGCCCGgCUagUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 101265 | 0.66 | 0.855121 |
Target: 5'- gGcCG-CCCCCGGcGCCGGUgGcGGCg -3' miRNA: 3'- gCaGCuGGGGGCC-CGGCUAgUaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 96849 | 0.66 | 0.869489 |
Target: 5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3' miRNA: 3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 90980 | 0.68 | 0.799458 |
Target: 5'- gCGU-GGCCUcguaCCGGGCCGAggCGgagcgGGCCg -3' miRNA: 3'- -GCAgCUGGG----GGCCCGGCUa-GUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 89592 | 0.66 | 0.882433 |
Target: 5'- cCGUCGAgCCgcgcgauCCCGGGUCGGUUucGGCg -3' miRNA: 3'- -GCAGCU-GG-------GGGCCCGGCUAGuaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 88704 | 0.69 | 0.746392 |
Target: 5'- -cUCGACCgUCgGGGUCGAUUggggcgGUGACCu -3' miRNA: 3'- gcAGCUGG-GGgCCCGGCUAG------UACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 86531 | 0.71 | 0.590685 |
Target: 5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3' miRNA: 3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 86363 | 0.71 | 0.590685 |
Target: 5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3' miRNA: 3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 86171 | 0.71 | 0.590685 |
Target: 5'- --cCGACcggaugCCCCGGGCCGAgccgggacggaugcUCcgGGCCg -3' miRNA: 3'- gcaGCUG------GGGGCCCGGCU--------------AGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 85432 | 0.66 | 0.883094 |
Target: 5'- --cCGACCCaagagcuuCUGGGCCGcgacaacaaCAUGGCCg -3' miRNA: 3'- gcaGCUGGG--------GGCCCGGCua-------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 83827 | 0.68 | 0.790908 |
Target: 5'- aCGcCGAgCCUCcGGCCGAUCGgucGCCg -3' miRNA: 3'- -GCaGCUgGGGGcCCGGCUAGUac-UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 81224 | 0.8 | 0.219522 |
Target: 5'- uCGUCGucCCCCCGGGCCGcgCGcGcACCa -3' miRNA: 3'- -GCAGCu-GGGGGCCCGGCuaGUaC-UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 77659 | 0.66 | 0.869489 |
Target: 5'- uGUgCGGCCCgCGGGUCugcggGGUCAUcgucGGCCu -3' miRNA: 3'- gCA-GCUGGGgGCCCGG-----CUAGUA----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 76600 | 0.74 | 0.460924 |
Target: 5'- -uUCGACCCgCCGGGUCGucGUCAguagcccuuagacgUGGCCg -3' miRNA: 3'- gcAGCUGGG-GGCCCGGC--UAGU--------------ACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 75368 | 0.66 | 0.862398 |
Target: 5'- --cCGACCCgCCGcGGCCGG-CGgcggcGGCCu -3' miRNA: 3'- gcaGCUGGG-GGC-CCGGCUaGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 72874 | 0.68 | 0.799458 |
Target: 5'- -cUCGACUCCUcGGCCGgGUCGcGGCCc -3' miRNA: 3'- gcAGCUGGGGGcCCGGC-UAGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 72685 | 0.72 | 0.561956 |
Target: 5'- aCGUCaggucccuccagggGuCCCCCGGGCCGAccacCGUGcCCa -3' miRNA: 3'- -GCAG--------------CuGGGGGCCCGGCUa---GUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 71794 | 0.68 | 0.790908 |
Target: 5'- aGUCGcCCCCCggcGGGCgCGG-CGaGGCCg -3' miRNA: 3'- gCAGCuGGGGG---CCCG-GCUaGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 71718 | 0.66 | 0.883094 |
Target: 5'- --gUGAUCUCCGGGUCGu---UGGCCg -3' miRNA: 3'- gcaGCUGGGGGCCCGGCuaguACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 68934 | 0.67 | 0.832229 |
Target: 5'- uCGUCG-CCCgCGGGCCGcggcgCcgGcGCCu -3' miRNA: 3'- -GCAGCuGGGgGCCCGGCua---GuaC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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