Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 67962 | 0.66 | 0.876389 |
Target: 5'- aCGgcgGGCCCagaCGGGUCGGUCGcuucucGACCu -3' miRNA: 3'- -GCag-CUGGGg--GCCCGGCUAGUa-----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 64307 | 0.72 | 0.583954 |
Target: 5'- cCGUCGugCuccgccaccacCCCGGGCCGuUUuUGGCCc -3' miRNA: 3'- -GCAGCugG-----------GGGCCCGGCuAGuACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 63189 | 0.68 | 0.773433 |
Target: 5'- gGUCGcGCUCCUGGGuCUGAcCGUcGACCu -3' miRNA: 3'- gCAGC-UGGGGGCCC-GGCUaGUA-CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 60286 | 0.7 | 0.699635 |
Target: 5'- cCGUCaACCCCUGGGCCucgCAgaagGGCUc -3' miRNA: 3'- -GCAGcUGGGGGCCCGGcuaGUa---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 59117 | 0.66 | 0.869489 |
Target: 5'- uCGUCGcgGCCaCCGaGGCCGAcuUCGcgcagGGCCg -3' miRNA: 3'- -GCAGC--UGGgGGC-CCGGCU--AGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 56264 | 0.67 | 0.847664 |
Target: 5'- --aCGGCCaCCGGGCCGAgcagCA-GGCg -3' miRNA: 3'- gcaGCUGGgGGCCCGGCUa---GUaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 53599 | 0.67 | 0.815322 |
Target: 5'- gCGUCGGCgUCaCCGGGCCGccgcagcGUCGgacgGACg -3' miRNA: 3'- -GCAGCUG-GG-GGCCCGGC-------UAGUa---CUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 52762 | 0.67 | 0.832229 |
Target: 5'- cCG-CG-CCgcggCCCGGGCCgcggGAUCGUGACg -3' miRNA: 3'- -GCaGCuGG----GGGCCCGG----CUAGUACUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 51951 | 0.72 | 0.545841 |
Target: 5'- aCGUCcaacaagaaGGCCUCCGGGaCCGGcaUCGUGGCg -3' miRNA: 3'- -GCAG---------CUGGGGGCCC-GGCU--AGUACUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 49699 | 0.68 | 0.782231 |
Target: 5'- gCGUCGGCacgacgacucgCCCCGGGCa-GUCGagccaGACCg -3' miRNA: 3'- -GCAGCUG-----------GGGGCCCGgcUAGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 49147 | 0.68 | 0.773433 |
Target: 5'- uGUCGACCCgaaaccagCGGGCCG-UCcgGgagGCCg -3' miRNA: 3'- gCAGCUGGGg-------GCCCGGCuAGuaC---UGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 48613 | 0.66 | 0.855121 |
Target: 5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3' miRNA: 3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 44287 | 0.67 | 0.824264 |
Target: 5'- aGUCcgcGCCCgCCGGGCCGGcgaggCGgggagcGACCg -3' miRNA: 3'- gCAGc--UGGG-GGCCCGGCUa----GUa-----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 44186 | 0.7 | 0.699635 |
Target: 5'- uCGUCGACUCcgggcgaagCCGGGCCGA-CGUccGGCUc -3' miRNA: 3'- -GCAGCUGGG---------GGCCCGGCUaGUA--CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 43029 | 0.67 | 0.840031 |
Target: 5'- uCGUCGGCCUCCaucgcgcggcaGGCCGAgcc-GGCCa -3' miRNA: 3'- -GCAGCUGGGGGc----------CCGGCUaguaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 38707 | 0.68 | 0.755506 |
Target: 5'- cCGUCGAgCgCCCCGGccGCCGAaaugggGACCu -3' miRNA: 3'- -GCAGCU-G-GGGGCC--CGGCUagua--CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 36179 | 0.69 | 0.727904 |
Target: 5'- --cCG-CgCCCCGGGCCGccagCAUGACg -3' miRNA: 3'- gcaGCuG-GGGGCCCGGCua--GUACUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 35074 | 0.67 | 0.825067 |
Target: 5'- gCGUgGGCgCCCUGGuGCCcGAgaucguggacgucagCGUGACCg -3' miRNA: 3'- -GCAgCUG-GGGGCC-CGG-CUa--------------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 35034 | 0.7 | 0.661267 |
Target: 5'- --cUGAUCCgCGGGCUGAUggagguccacCAUGACCg -3' miRNA: 3'- gcaGCUGGGgGCCCGGCUA----------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 34795 | 0.74 | 0.445286 |
Target: 5'- aGUCGGCCgaaccggCCCGGGCCGcgCGacACCa -3' miRNA: 3'- gCAGCUGG-------GGGCCCGGCuaGUacUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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