Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 3' | -59 | NC_002794.1 | + | 32511 | 0.66 | 0.883094 |
Target: 5'- uGcCGGCUCCCGccguGCCGGUgAUGAgCa -3' miRNA: 3'- gCaGCUGGGGGCc---CGGCUAgUACUgG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 134590 | 0.66 | 0.883094 |
Target: 5'- aGagGA-CCUCGGGCCGAcUCcgGAUCc -3' miRNA: 3'- gCagCUgGGGGCCCGGCU-AGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 102864 | 0.66 | 0.8896 |
Target: 5'- gCGUgGugCgCCGGGaUCGGUUucUGGCCg -3' miRNA: 3'- -GCAgCugGgGGCCC-GGCUAGu-ACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 85432 | 0.66 | 0.883094 |
Target: 5'- --cCGACCCaagagcuuCUGGGCCGcgacaacaaCAUGGCCg -3' miRNA: 3'- gcaGCUGGG--------GGCCCGGCua-------GUACUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 117203 | 0.66 | 0.8896 |
Target: 5'- gCGUCGGgCCCgGgcggcuccGGCCGcGUCAgggcGACCg -3' miRNA: 3'- -GCAGCUgGGGgC--------CCGGC-UAGUa---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 96849 | 0.66 | 0.869489 |
Target: 5'- --aCGACCCuuGaGGCCaccGUCGUGuCCu -3' miRNA: 3'- gcaGCUGGGggC-CCGGc--UAGUACuGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 113925 | 0.66 | 0.861679 |
Target: 5'- gGUCGGCCgCCgaggcgaCGGGCCGcugCcgGGCUu -3' miRNA: 3'- gCAGCUGG-GG-------GCCCGGCua-GuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 187467 | 0.67 | 0.832229 |
Target: 5'- gCGUCGcucggcGCgCgCCGGGCCGAggaCGaGGCCg -3' miRNA: 3'- -GCAGC------UGgG-GGCCCGGCUa--GUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 52762 | 0.67 | 0.832229 |
Target: 5'- cCG-CG-CCgcggCCCGGGCCgcggGAUCGUGACg -3' miRNA: 3'- -GCaGCuGG----GGGCCCGG----CUAGUACUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 43029 | 0.67 | 0.840031 |
Target: 5'- uCGUCGGCCUCCaucgcgcggcaGGCCGAgcc-GGCCa -3' miRNA: 3'- -GCAGCUGGGGGc----------CCGGCUaguaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 152411 | 0.67 | 0.840031 |
Target: 5'- uCGcCGACCugcugcCCCGGGCCGucuGUCGgcagcugGGCUa -3' miRNA: 3'- -GCaGCUGG------GGGCCCGGC---UAGUa------CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 114741 | 0.67 | 0.840031 |
Target: 5'- uCGUCGagccggcgccGCCCgCCGGcGCCGGUCcucGGCg -3' miRNA: 3'- -GCAGC----------UGGG-GGCC-CGGCUAGua-CUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 56264 | 0.67 | 0.847664 |
Target: 5'- --aCGGCCaCCGGGCCGAgcagCA-GGCg -3' miRNA: 3'- gcaGCUGGgGGCCCGGCUa---GUaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 48613 | 0.66 | 0.855121 |
Target: 5'- gCGUCGGCCUCagacgcggaGcGGCCG-UCggGGCCc -3' miRNA: 3'- -GCAGCUGGGGg--------C-CCGGCuAGuaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 109520 | 0.67 | 0.845392 |
Target: 5'- --cCGGCCCgcgcucguucggcgUCGGGCCGggCG-GACCg -3' miRNA: 3'- gcaGCUGGG--------------GGCCCGGCuaGUaCUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 131478 | 0.66 | 0.858054 |
Target: 5'- --aCGACCUcgcccguguuaggcaCCGGGCCcGUCAUcacGACCu -3' miRNA: 3'- gcaGCUGGG---------------GGCCCGGcUAGUA---CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 101265 | 0.66 | 0.855121 |
Target: 5'- gGcCG-CCCCCGGcGCCGGUgGcGGCg -3' miRNA: 3'- gCaGCuGGGGGCC-CGGCUAgUaCUGg -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 32826 | 0.66 | 0.861679 |
Target: 5'- uCGUCGG-CCUCGcGGCCGGcUCAUcgguagcggcagcGGCCg -3' miRNA: 3'- -GCAGCUgGGGGC-CCGGCU-AGUA-------------CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 59117 | 0.66 | 0.869489 |
Target: 5'- uCGUCGcgGCCaCCGaGGCCGAcuUCGcgcagGGCCg -3' miRNA: 3'- -GCAGC--UGGgGGC-CCGGCU--AGUa----CUGG- -5' |
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10982 | 3' | -59 | NC_002794.1 | + | 75368 | 0.66 | 0.862398 |
Target: 5'- --cCGACCCgCCGcGGCCGG-CGgcggcGGCCu -3' miRNA: 3'- gcaGCUGGG-GGC-CCGGCUaGUa----CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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