miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 143356 0.66 0.998227
Target:  5'- gGCGAUagggGAUcaGGGUGAGGGGCAgauaggAGAGGg -3'
miRNA:   3'- -UGCUGg---CUG--CUCGCUUUUCGU------UCUCC- -5'
10982 5' -51 NC_002794.1 + 44348 0.66 0.998227
Target:  5'- gGCG-CCGGCGAGacCGAGAGcGCGGcGGGc -3'
miRNA:   3'- -UGCuGGCUGCUC--GCUUUU-CGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 12707 0.66 0.998227
Target:  5'- uCGGCCGugGGcugcGCGuuccgcGGCGAcGAGGg -3'
miRNA:   3'- uGCUGGCugCU----CGCuuu---UCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 55305 0.66 0.998227
Target:  5'- gGCGGCgucgCGGCGGGCGc-GGGCGGcuuccGAGGa -3'
miRNA:   3'- -UGCUG----GCUGCUCGCuuUUCGUU-----CUCC- -5'
10982 5' -51 NC_002794.1 + 47789 0.66 0.998227
Target:  5'- aGCGGCCGcaguacACGgucucGGCGAAcAGGCGGacGAGGg -3'
miRNA:   3'- -UGCUGGC------UGC-----UCGCUU-UUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 42573 0.66 0.998227
Target:  5'- cGCGGCgGACccGCGGAcGG-AGGAGGg -3'
miRNA:   3'- -UGCUGgCUGcuCGCUUuUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 191278 0.66 0.998227
Target:  5'- cCGAcCCGGCGAGacaccacaccacCGAGAcacggauGCGAGGGGc -3'
miRNA:   3'- uGCU-GGCUGCUC------------GCUUUu------CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 64803 0.66 0.998227
Target:  5'- gGCGAgCGACGccGCGGAcGGCGGcGAGc -3'
miRNA:   3'- -UGCUgGCUGCu-CGCUUuUCGUU-CUCc -5'
10982 5' -51 NC_002794.1 + 153693 0.66 0.997888
Target:  5'- cGCGACCGGCGAcCGGuuuAGCGAc--- -3'
miRNA:   3'- -UGCUGGCUGCUcGCUuu-UCGUUcucc -5'
10982 5' -51 NC_002794.1 + 182305 0.66 0.997888
Target:  5'- gACGGgCaGACGGGCGGAcGGGCGGucGGg -3'
miRNA:   3'- -UGCUgG-CUGCUCGCUU-UUCGUUcuCC- -5'
10982 5' -51 NC_002794.1 + 159896 0.66 0.997888
Target:  5'- -aGGgCGGgGuAGCGAAGGGUAGGuGGg -3'
miRNA:   3'- ugCUgGCUgC-UCGCUUUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 107216 0.66 0.997888
Target:  5'- gGCG-CCGcCGGGCGgcGcGCGAcGGGGg -3'
miRNA:   3'- -UGCuGGCuGCUCGCuuUuCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 128089 0.66 0.997888
Target:  5'- cCGAgUCGGCGA-CGggGAGCucgacGGGGGg -3'
miRNA:   3'- uGCU-GGCUGCUcGCuuUUCGu----UCUCC- -5'
10982 5' -51 NC_002794.1 + 180954 0.66 0.997851
Target:  5'- cGCGGCCGACGcggacuccgucggGGCGAAcaacucCGAGAcGGa -3'
miRNA:   3'- -UGCUGGCUGC-------------UCGCUUuuc---GUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 158153 0.66 0.997776
Target:  5'- gGCGACgaggggaagguccaCGGUGAGCGGAAccgcgaugGGUGAGGGGg -3'
miRNA:   3'- -UGCUG--------------GCUGCUCGCUUU--------UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 187589 0.66 0.997659
Target:  5'- cGCGGCCGcCGucGCGAcgcccggcgucgcccAGAGCcgcugGAGAGGc -3'
miRNA:   3'- -UGCUGGCuGCu-CGCU---------------UUUCG-----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 91275 0.66 0.997659
Target:  5'- -gGACCGGCGcggccuguacgugucGGCGcuGAGCGAGGc- -3'
miRNA:   3'- ugCUGGCUGC---------------UCGCuuUUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 71790 0.66 0.997496
Target:  5'- gGCGAgucgccccCCGGCGGGCGc--GGCGAGGc- -3'
miRNA:   3'- -UGCU--------GGCUGCUCGCuuuUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 92267 0.66 0.997496
Target:  5'- gGCGGCggCGcCGGGCGAGGcgcgcaaggucGGCGAcGAGGc -3'
miRNA:   3'- -UGCUG--GCuGCUCGCUUU-----------UCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 13314 0.66 0.997496
Target:  5'- cCGcCCGGCGAGCGAcGaccgcucccccGGUcGGGGGu -3'
miRNA:   3'- uGCuGGCUGCUCGCUuU-----------UCGuUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.