Results 41 - 60 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 104709 | 0.67 | 0.993667 |
Target: 5'- -aGACCGGCGuGCacGAGAGguAGAuGGg -3' miRNA: 3'- ugCUGGCUGCuCGc-UUUUCguUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 53790 | 0.67 | 0.993667 |
Target: 5'- cGCGcCCGGCGgguuucucGGCGGGAgccucGGCGGGAGc -3' miRNA: 3'- -UGCuGGCUGC--------UCGCUUU-----UCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 148083 | 0.67 | 0.993667 |
Target: 5'- gUGGCCu-CGAGCGAGGAGCAGc--- -3' miRNA: 3'- uGCUGGcuGCUCGCUUUUCGUUcucc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 146743 | 0.67 | 0.992715 |
Target: 5'- gACGACgGGCc-GCGGAucGgGGGAGGg -3' miRNA: 3'- -UGCUGgCUGcuCGCUUuuCgUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 137930 | 0.67 | 0.992715 |
Target: 5'- cGCGGUCGAUGAGCuGGAGGCAgcGGcGGa -3' miRNA: 3'- -UGCUGGCUGCUCGcUUUUCGU--UCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 139822 | 0.67 | 0.992715 |
Target: 5'- -gGACCugGACGA-CGAAGAcCAAGAGGu -3' miRNA: 3'- ugCUGG--CUGCUcGCUUUUcGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 5801 | 0.67 | 0.992715 |
Target: 5'- cUGACCGuCG-GUGAGAccccGGUggGGGGg -3' miRNA: 3'- uGCUGGCuGCuCGCUUU----UCGuuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 105550 | 0.67 | 0.994436 |
Target: 5'- gGCGGCUcgGGCGAacggauagggugcGCGuAGAGCAGGAGc -3' miRNA: 3'- -UGCUGG--CUGCU-------------CGCuUUUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 136117 | 0.67 | 0.994516 |
Target: 5'- uGC-ACCuGGCGGGCGAagucGAAG-AGGAGGg -3' miRNA: 3'- -UGcUGG-CUGCUCGCU----UUUCgUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 24819 | 0.67 | 0.994516 |
Target: 5'- cGCGACCGACGA-CGGGu--CAcGGGGa -3' miRNA: 3'- -UGCUGGCUGCUcGCUUuucGUuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 47992 | 0.67 | 0.995939 |
Target: 5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3' miRNA: 3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 70273 | 0.67 | 0.995939 |
Target: 5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3' miRNA: 3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 84017 | 0.67 | 0.995939 |
Target: 5'- cACGACgGgcACGAGCGAc--GCGAGcGGc -3' miRNA: 3'- -UGCUGgC--UGCUCGCUuuuCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 100349 | 0.67 | 0.995939 |
Target: 5'- uCGACCGcCGAGCuGGAGGUGGacugcGAGGu -3' miRNA: 3'- uGCUGGCuGCUCGcUUUUCGUU-----CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 176939 | 0.67 | 0.995939 |
Target: 5'- gUGGCCGcUGAGUGAAAcgggGGCAGcGGGa -3' miRNA: 3'- uGCUGGCuGCUCGCUUU----UCGUUcUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 129075 | 0.67 | 0.994516 |
Target: 5'- cGCGGCUGGCG-GCGGAccguccGGUggGuGGa -3' miRNA: 3'- -UGCUGGCUGCuCGCUUu-----UCGuuCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 56040 | 0.67 | 0.995271 |
Target: 5'- aGCGGCaGAaGAGCGu-GGGCAGGuGGa -3' miRNA: 3'- -UGCUGgCUgCUCGCuuUUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 108474 | 0.67 | 0.995271 |
Target: 5'- -gGGCCGAgGGGCGAccGGcCAAGAu- -3' miRNA: 3'- ugCUGGCUgCUCGCUuuUC-GUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 101589 | 0.67 | 0.994516 |
Target: 5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3' miRNA: 3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 66959 | 0.67 | 0.994516 |
Target: 5'- -aGGCCGGCGAGuCGcuc-GCcGGGGGa -3' miRNA: 3'- ugCUGGCUGCUC-GCuuuuCGuUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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