miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 101589 0.67 0.994516
Target:  5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 66959 0.67 0.994516
Target:  5'- -aGGCCGGCGAGuCGcuc-GCcGGGGGa -3'
miRNA:   3'- ugCUGGCUGCUC-GCuuuuCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 24819 0.67 0.994516
Target:  5'- cGCGACCGACGA-CGGGu--CAcGGGGa -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuucGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 38136 0.68 0.990471
Target:  5'- -gGGgCGugGAGUc--GAGCAGGAGGu -3'
miRNA:   3'- ugCUgGCugCUCGcuuUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 87088 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 103577 0.68 0.989163
Target:  5'- gUGGCCGACGAgcaGCGGucGGGCAGGcAGcGg -3'
miRNA:   3'- uGCUGGCUGCU---CGCUu-UUCGUUC-UC-C- -5'
10982 5' -51 NC_002794.1 + 107943 0.68 0.989163
Target:  5'- aGCGGCUGGCucgcuacccGcGCGAGAAGCuGGAGa -3'
miRNA:   3'- -UGCUGGCUG---------CuCGCUUUUCGuUCUCc -5'
10982 5' -51 NC_002794.1 + 112320 0.68 0.989163
Target:  5'- gGCG-CCGACG-GCGggGAGCGc---- -3'
miRNA:   3'- -UGCuGGCUGCuCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 37752 0.68 0.989163
Target:  5'- gGCGGCgCGGCG-GCGcc-GGCGGGAGcGg -3'
miRNA:   3'- -UGCUG-GCUGCuCGCuuuUCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 29914 0.68 0.988166
Target:  5'- -gGACCGACGAcgggcaGCGAcgagccgccguccggGAAGCGgcaccuagcagacGGAGGg -3'
miRNA:   3'- ugCUGGCUGCU------CGCU---------------UUUCGU-------------UCUCC- -5'
10982 5' -51 NC_002794.1 + 87130 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 115881 0.68 0.990471
Target:  5'- gGCGuCCGggGCGuccGCGGAgcGCGGGGGGu -3'
miRNA:   3'- -UGCuGGC--UGCu--CGCUUuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 101496 0.68 0.990471
Target:  5'- gGCGGCCGGucCGAGCGGugcGGCAcacgccGGcGGGg -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUuu-UCGU------UC-UCC- -5'
10982 5' -51 NC_002794.1 + 87256 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87214 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87172 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 64684 0.68 0.991653
Target:  5'- cUGugCGACGAcgGCGAGgcGAGCGcggacGAGGa -3'
miRNA:   3'- uGCugGCUGCU--CGCUU--UUCGUu----CUCC- -5'
10982 5' -51 NC_002794.1 + 182263 0.68 0.991653
Target:  5'- aGCGcGCCGAguccCGAGCGGccucccaugacGGGGCGGGuGGa -3'
miRNA:   3'- -UGC-UGGCU----GCUCGCU-----------UUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 142350 0.68 0.991653
Target:  5'- gGCGGCgGAgGcGGCGGAGgcGGCGgaggcGGAGGg -3'
miRNA:   3'- -UGCUGgCUgC-UCGCUUU--UCGU-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 140189 0.68 0.987718
Target:  5'- gGCGACggcgucguCGAgGGGCGAcccGGGCcGGAGGa -3'
miRNA:   3'- -UGCUG--------GCUgCUCGCUu--UUCGuUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.