miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 87172 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87214 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87256 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 101496 0.68 0.990471
Target:  5'- gGCGGCCGGucCGAGCGGugcGGCAcacgccGGcGGGg -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUuu-UCGU------UC-UCC- -5'
10982 5' -51 NC_002794.1 + 115881 0.68 0.990471
Target:  5'- gGCGuCCGggGCGuccGCGGAgcGCGGGGGGu -3'
miRNA:   3'- -UGCuGGC--UGCu--CGCUUuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 87130 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 38136 0.68 0.990471
Target:  5'- -gGGgCGugGAGUc--GAGCAGGAGGu -3'
miRNA:   3'- ugCUgGCugCUCGcuuUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 91754 0.69 0.982482
Target:  5'- --uGCCGGCGGGCGGcaccgcGCAGGAcGGg -3'
miRNA:   3'- ugcUGGCUGCUCGCUuuu---CGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 112111 0.69 0.982482
Target:  5'- cGCGGCCggGACGAcggcGCGggGAGguAGAucGGc -3'
miRNA:   3'- -UGCUGG--CUGCU----CGCuuUUCguUCU--CC- -5'
10982 5' -51 NC_002794.1 + 93853 0.69 0.980409
Target:  5'- gACGGCCGcgGCG-GCGAGccgcccGAGUAcGAGGa -3'
miRNA:   3'- -UGCUGGC--UGCuCGCUU------UUCGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 99563 0.69 0.980409
Target:  5'- cGCGcccuCCG-CGGGCGAGGGGgGugcGGAGGg -3'
miRNA:   3'- -UGCu---GGCuGCUCGCUUUUCgU---UCUCC- -5'
10982 5' -51 NC_002794.1 + 66506 0.69 0.980409
Target:  5'- cUGAUCGGCGAGCGAuAGGCcguccccGGGu -3'
miRNA:   3'- uGCUGGCUGCUCGCUuUUCGuuc----UCC- -5'
10982 5' -51 NC_002794.1 + 178270 0.69 0.984203
Target:  5'- cUGACCGGagacggggucgguCGAGCGAcggcucGAcGCGGGAGGc -3'
miRNA:   3'- uGCUGGCU-------------GCUCGCU------UUuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 84736 0.69 0.984386
Target:  5'- cCGACCGACGGcaacgccaCGAccgGccGCGAGAGGg -3'
miRNA:   3'- uGCUGGCUGCUc-------GCU---UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 119299 0.69 0.984386
Target:  5'- -aGGCCagGGCGAGCuGAcAGAGCucguGGAGGa -3'
miRNA:   3'- ugCUGG--CUGCUCG-CU-UUUCGu---UCUCC- -5'
10982 5' -51 NC_002794.1 + 103663 0.69 0.984386
Target:  5'- gGCGuGCCGguGCGAGUGGAAguggaagggcAGCGAGAuGGc -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUUU----------UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 118988 0.69 0.984386
Target:  5'- cACGuCCGG-GcGCGggGAGaCGAGGGGg -3'
miRNA:   3'- -UGCuGGCUgCuCGCuuUUC-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 141657 0.69 0.984386
Target:  5'- cGCGGCCGcCG-GCGGGucGAGCgAAGAcGGg -3'
miRNA:   3'- -UGCUGGCuGCuCGCUU--UUCG-UUCU-CC- -5'
10982 5' -51 NC_002794.1 + 181431 0.69 0.984386
Target:  5'- cGCGaaGCCGuCG-GCGAGGGGCcgcccGGAGGa -3'
miRNA:   3'- -UGC--UGGCuGCuCGCUUUUCGu----UCUCC- -5'
10982 5' -51 NC_002794.1 + 141828 0.69 0.978158
Target:  5'- gACGA-CGACGAGCGGAucGCucGGcGGu -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUuuCGuuCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.