miRNA display CGI


Results 101 - 120 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 181431 0.69 0.984386
Target:  5'- cGCGaaGCCGuCG-GCGAGGGGCcgcccGGAGGa -3'
miRNA:   3'- -UGC--UGGCuGCuCGCUUUUCGu----UCUCC- -5'
10982 5' -51 NC_002794.1 + 141657 0.69 0.984386
Target:  5'- cGCGGCCGcCG-GCGGGucGAGCgAAGAcGGg -3'
miRNA:   3'- -UGCUGGCuGCuCGCUU--UUCG-UUCU-CC- -5'
10982 5' -51 NC_002794.1 + 118988 0.69 0.984386
Target:  5'- cACGuCCGG-GcGCGggGAGaCGAGGGGg -3'
miRNA:   3'- -UGCuGGCUgCuCGCuuUUC-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 103663 0.69 0.984386
Target:  5'- gGCGuGCCGguGCGAGUGGAAguggaagggcAGCGAGAuGGc -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUUU----------UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 119299 0.69 0.984386
Target:  5'- -aGGCCagGGCGAGCuGAcAGAGCucguGGAGGa -3'
miRNA:   3'- ugCUGG--CUGCUCG-CU-UUUCGu---UCUCC- -5'
10982 5' -51 NC_002794.1 + 84736 0.69 0.984386
Target:  5'- cCGACCGACGGcaacgccaCGAccgGccGCGAGAGGg -3'
miRNA:   3'- uGCUGGCUGCUc-------GCU---UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 178270 0.69 0.984203
Target:  5'- cUGACCGGagacggggucgguCGAGCGAcggcucGAcGCGGGAGGc -3'
miRNA:   3'- uGCUGGCU-------------GCUCGCU------UUuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 91754 0.69 0.982482
Target:  5'- --uGCCGGCGGGCGGcaccgcGCAGGAcGGg -3'
miRNA:   3'- ugcUGGCUGCUCGCUuuu---CGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 112111 0.69 0.982482
Target:  5'- cGCGGCCggGACGAcggcGCGggGAGguAGAucGGc -3'
miRNA:   3'- -UGCUGG--CUGCU----CGCuuUUCguUCU--CC- -5'
10982 5' -51 NC_002794.1 + 149449 0.7 0.967225
Target:  5'- uCGAUCucggggaagggGGCGGuCGAGGAGCGAGGGGg -3'
miRNA:   3'- uGCUGG-----------CUGCUcGCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 187796 0.7 0.967225
Target:  5'- aACGGCCcGCGaAGCGAGcGAGCGAGuGa -3'
miRNA:   3'- -UGCUGGcUGC-UCGCUU-UUCGUUCuCc -5'
10982 5' -51 NC_002794.1 + 158099 0.7 0.967225
Target:  5'- -gGAUCGugGGGCGGucgcgccguAGCGGGAGa -3'
miRNA:   3'- ugCUGGCugCUCGCUuu-------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 55394 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 141329 0.7 0.967225
Target:  5'- uCGGCUcgguGGCGAGCGAAGA-CGAGAGc -3'
miRNA:   3'- uGCUGG----CUGCUCGCUUUUcGUUCUCc -5'
10982 5' -51 NC_002794.1 + 69746 0.7 0.973092
Target:  5'- cACGGCCGGCGAcgccGCGggGauGGCGAcGAa- -3'
miRNA:   3'- -UGCUGGCUGCU----CGCuuU--UCGUU-CUcc -5'
10982 5' -51 NC_002794.1 + 99351 0.7 0.967225
Target:  5'- gGCGAUCcgucgguugGACGAa-GAGAAGCGGGAGGu -3'
miRNA:   3'- -UGCUGG---------CUGCUcgCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 94279 0.7 0.973092
Target:  5'- cGCGGCgCGGCccGAGCGggGGGCGGcucGGGc -3'
miRNA:   3'- -UGCUG-GCUG--CUCGCuuUUCGUUc--UCC- -5'
10982 5' -51 NC_002794.1 + 4041 0.7 0.973092
Target:  5'- aGCGACCGGCaucauGAGCGAcccccgcGGCAAuGGGu -3'
miRNA:   3'- -UGCUGGCUG-----CUCGCUuu-----UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 106356 0.7 0.973092
Target:  5'- gACGGCgGGCGGGCGccgguucGCGcGGAGGg -3'
miRNA:   3'- -UGCUGgCUGCUCGCuuuu---CGU-UCUCC- -5'
10982 5' -51 NC_002794.1 + 123699 0.7 0.963975
Target:  5'- cGCGACUGGCGGGCGu-GAGCGc---- -3'
miRNA:   3'- -UGCUGGCUGCUCGCuuUUCGUucucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.