Results 21 - 40 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 42482 | 0.73 | 0.900547 |
Target: 5'- cGCGcGCCGGggcCGAGCGGAgagugugagaaaGAGCGAGAGa -3' miRNA: 3'- -UGC-UGGCU---GCUCGCUU------------UUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 38098 | 0.73 | 0.893991 |
Target: 5'- cGCGACCGGC--GUGAAGAcGCGGGAGa -3' miRNA: 3'- -UGCUGGCUGcuCGCUUUU-CGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 141615 | 0.73 | 0.887203 |
Target: 5'- gGCGACCGGCucGCGGucuAGCGAcGGGa -3' miRNA: 3'- -UGCUGGCUGcuCGCUuu-UCGUUcUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 131708 | 0.73 | 0.887203 |
Target: 5'- cCGACCGgaccccgagaGCGAGCGAGcGGGCGAGAu- -3' miRNA: 3'- uGCUGGC----------UGCUCGCUU-UUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 125709 | 0.72 | 0.912947 |
Target: 5'- gUGACgGugGAGCGGAGcgaacGGgAGGAGGc -3' miRNA: 3'- uGCUGgCugCUCGCUUU-----UCgUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 98351 | 0.72 | 0.929215 |
Target: 5'- uACGACCGGcCGAucgccgcGCGGcuGGCGGGAGa -3' miRNA: 3'- -UGCUGGCU-GCU-------CGCUuuUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 18251 | 0.72 | 0.906867 |
Target: 5'- cGCGGCCGACcGGCGAcc-GCGAGAu- -3' miRNA: 3'- -UGCUGGCUGcUCGCUuuuCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 96543 | 0.72 | 0.923836 |
Target: 5'- cGCG-CCGACGAaccggucGaCGAGGAGCGGGAGcGg -3' miRNA: 3'- -UGCuGGCUGCU-------C-GCUUUUCGUUCUC-C- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 137744 | 0.72 | 0.924385 |
Target: 5'- -gGGCCGACGcuuggaacggcGGCucGAAGAGCAGGAuGGg -3' miRNA: 3'- ugCUGGCUGC-----------UCG--CUUUUCGUUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 110455 | 0.72 | 0.904996 |
Target: 5'- -aGGCCGGCGAGCcggcucgucggcucGggGGGUAgAGAGGc -3' miRNA: 3'- ugCUGGCUGCUCG--------------CuuUUCGU-UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 108374 | 0.72 | 0.906867 |
Target: 5'- -nGACCGGgcgccgGAGCGggGAGC-GGAGGc -3' miRNA: 3'- ugCUGGCUg-----CUCGCuuUUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 191912 | 0.72 | 0.92974 |
Target: 5'- -gGACCGGCugaaucGGCGAAGA-CGAGAGGa -3' miRNA: 3'- ugCUGGCUGc-----UCGCUUUUcGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 135634 | 0.72 | 0.92974 |
Target: 5'- gACG-UCGGCGAacaacagcGCGGAGGGUggGGGGg -3' miRNA: 3'- -UGCuGGCUGCU--------CGCUUUUCGuuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 94048 | 0.72 | 0.924385 |
Target: 5'- aGCGG-CGGCGGuGCGggGgcGGCGGGGGGc -3' miRNA: 3'- -UGCUgGCUGCU-CGCuuU--UCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 7805 | 0.72 | 0.918787 |
Target: 5'- cCGACUcgGAUGAG-GAuGAGCGGGAGGg -3' miRNA: 3'- uGCUGG--CUGCUCgCUuUUCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 146595 | 0.72 | 0.924385 |
Target: 5'- gACGaaGCUGuCGAGCGAcgAAGGCGGcGAGGa -3' miRNA: 3'- -UGC--UGGCuGCUCGCU--UUUCGUU-CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 55236 | 0.71 | 0.948739 |
Target: 5'- gACGACgaugaagaCGACGAGgaggacgcCGAAGAGCcGGGGGg -3' miRNA: 3'- -UGCUG--------GCUGCUC--------GCUUUUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 185625 | 0.71 | 0.939721 |
Target: 5'- aGCGA-CGGCGAGCGAGAcuCGAGcGGc -3' miRNA: 3'- -UGCUgGCUGCUCGCUUUucGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 65181 | 0.71 | 0.934851 |
Target: 5'- -aGACCGGCGGGUGcc-GGCGAGGucGGa -3' miRNA: 3'- ugCUGGCUGCUCGCuuuUCGUUCU--CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 96760 | 0.71 | 0.94435 |
Target: 5'- aGCGGCCGGCGGuCGAGucGCccGGGGu -3' miRNA: 3'- -UGCUGGCUGCUcGCUUuuCGuuCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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