miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 112500 0.71 0.948739
Target:  5'- cACGuACCG-CGAGCGGucgcggugcuGgcGCAGGAGGu -3'
miRNA:   3'- -UGC-UGGCuGCUCGCU----------UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 65181 0.71 0.934851
Target:  5'- -aGACCGGCGGGUGcc-GGCGAGGucGGa -3'
miRNA:   3'- ugCUGGCUGCUCGCuuuUCGUUCU--CC- -5'
10982 5' -51 NC_002794.1 + 55236 0.71 0.948739
Target:  5'- gACGACgaugaagaCGACGAGgaggacgcCGAAGAGCcGGGGGg -3'
miRNA:   3'- -UGCUG--------GCUGCUC--------GCUUUUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 40516 0.71 0.94435
Target:  5'- cACGGCCGcCGAcGCGccgacGGGAGaCGAGGGGg -3'
miRNA:   3'- -UGCUGGCuGCU-CGC-----UUUUC-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 96760 0.71 0.94435
Target:  5'- aGCGGCCGGCGGuCGAGucGCccGGGGu -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuuCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 185625 0.71 0.939721
Target:  5'- aGCGA-CGGCGAGCGAGAcuCGAGcGGc -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUUucGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 105873 0.71 0.952893
Target:  5'- gGCG-CCGAgGAcGUGggGGGUggGAGAGGa -3'
miRNA:   3'- -UGCuGGCUgCU-CGCuuUUCG--UUCUCC- -5'
10982 5' -51 NC_002794.1 + 192961 0.71 0.952893
Target:  5'- -aGGCCGACGAGCcgu--GCAGGAccaGGg -3'
miRNA:   3'- ugCUGGCUGCUCGcuuuuCGUUCU---CC- -5'
10982 5' -51 NC_002794.1 + 118326 0.71 0.948739
Target:  5'- cGCGACgGGCG-GCGAgaAGAGCAGGucGc -3'
miRNA:   3'- -UGCUGgCUGCuCGCU--UUUCGUUCucC- -5'
10982 5' -51 NC_002794.1 + 55394 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 123699 0.7 0.963975
Target:  5'- cGCGACUGGCGGGCGu-GAGCGc---- -3'
miRNA:   3'- -UGCUGGCUGCUCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 55358 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 116036 0.7 0.963975
Target:  5'- -gGACCGGaGAG-GAGAGcGCAGGGGGg -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUU-CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 158099 0.7 0.967225
Target:  5'- -gGAUCGugGGGCGGucgcgccguAGCGGGAGa -3'
miRNA:   3'- ugCUGGCugCUCGCUuu-------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 187796 0.7 0.967225
Target:  5'- aACGGCCcGCGaAGCGAGcGAGCGAGuGa -3'
miRNA:   3'- -UGCUGGcUGC-UCGCUU-UUCGUUCuCc -5'
10982 5' -51 NC_002794.1 + 149449 0.7 0.967225
Target:  5'- uCGAUCucggggaagggGGCGGuCGAGGAGCGAGGGGg -3'
miRNA:   3'- uGCUGG-----------CUGCUcGCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 69746 0.7 0.973092
Target:  5'- cACGGCCGGCGAcgccGCGggGauGGCGAcGAa- -3'
miRNA:   3'- -UGCUGGCUGCU----CGCuuU--UCGUU-CUcc -5'
10982 5' -51 NC_002794.1 + 99351 0.7 0.967225
Target:  5'- gGCGAUCcgucgguugGACGAa-GAGAAGCGGGAGGu -3'
miRNA:   3'- -UGCUGG---------CUGCUcgCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 94279 0.7 0.973092
Target:  5'- cGCGGCgCGGCccGAGCGggGGGCGGcucGGGc -3'
miRNA:   3'- -UGCUG-GCUG--CUCGCuuUUCGUUc--UCC- -5'
10982 5' -51 NC_002794.1 + 4041 0.7 0.973092
Target:  5'- aGCGACCGGCaucauGAGCGAcccccgcGGCAAuGGGu -3'
miRNA:   3'- -UGCUGGCUG-----CUCGCUuu-----UCGUUcUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.