miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 141329 0.7 0.967225
Target:  5'- uCGGCUcgguGGCGAGCGAAGA-CGAGAGc -3'
miRNA:   3'- uGCUGG----CUGCUCGCUUUUcGUUCUCc -5'
10982 5' -51 NC_002794.1 + 86744 0.7 0.956814
Target:  5'- cCGACCgcGACGAGCGAAGccGGguGGAu- -3'
miRNA:   3'- uGCUGG--CUGCUCGCUUU--UCguUCUcc -5'
10982 5' -51 NC_002794.1 + 55394 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 180696 0.7 0.960507
Target:  5'- gGCGcCCGGCGGGCGGAccauGGCucGGGu -3'
miRNA:   3'- -UGCuGGCUGCUCGCUUu---UCGuuCUCc -5'
10982 5' -51 NC_002794.1 + 62706 0.7 0.960507
Target:  5'- gGCGGCCGcCGAcGCGAcccAGCGAGAc- -3'
miRNA:   3'- -UGCUGGCuGCU-CGCUuu-UCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 115964 0.7 0.960507
Target:  5'- -gGACCGugGGGgGG--AGCGGGAcGGg -3'
miRNA:   3'- ugCUGGCugCUCgCUuuUCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 121731 0.7 0.960507
Target:  5'- gACGACgaCGACGAGCacggcGGCGAGAcGGa -3'
miRNA:   3'- -UGCUG--GCUGCUCGcuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 185467 0.7 0.960507
Target:  5'- aACG-CCG-CGGGCGGcggccgcGGCGAGGGGa -3'
miRNA:   3'- -UGCuGGCuGCUCGCUuu-----UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 129210 0.7 0.960507
Target:  5'- aGCGGCCGACG-GCGGuggauAGGCGcGAacGGg -3'
miRNA:   3'- -UGCUGGCUGCuCGCUu----UUCGUuCU--CC- -5'
10982 5' -51 NC_002794.1 + 152533 0.7 0.963975
Target:  5'- uACGACCGccuguGCGAcuGCGAAGAGUgccAGGAGcGg -3'
miRNA:   3'- -UGCUGGC-----UGCU--CGCUUUUCG---UUCUC-C- -5'
10982 5' -51 NC_002794.1 + 116036 0.7 0.963975
Target:  5'- -gGACCGGaGAG-GAGAGcGCAGGGGGg -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUU-CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 123699 0.7 0.963975
Target:  5'- cGCGACUGGCGGGCGu-GAGCGc---- -3'
miRNA:   3'- -UGCUGGCUGCUCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 180408 0.69 0.974953
Target:  5'- -gGACCGACGucGCGuuGAAGCGggccaucucgacacGGAGGc -3'
miRNA:   3'- ugCUGGCUGCu-CGCu-UUUCGU--------------UCUCC- -5'
10982 5' -51 NC_002794.1 + 134129 0.69 0.975721
Target:  5'- gACGGCgCGGCGAGCGcGGAAGCucGGu- -3'
miRNA:   3'- -UGCUG-GCUGCUCGC-UUUUCGuuCUcc -5'
10982 5' -51 NC_002794.1 + 69590 0.69 0.974953
Target:  5'- cGCGuCgGACGAGCGGGAGGCcgccuccacgaccaAcgcgaGGAGGa -3'
miRNA:   3'- -UGCuGgCUGCUCGCUUUUCG--------------U-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 93853 0.69 0.980409
Target:  5'- gACGGCCGcgGCG-GCGAGccgcccGAGUAcGAGGa -3'
miRNA:   3'- -UGCUGGC--UGCuCGCUU------UUCGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 9766 0.69 0.978158
Target:  5'- -aGACCGAcccCGGGCaaagugaacacaGAGAAGCGAGGGc -3'
miRNA:   3'- ugCUGGCU---GCUCG------------CUUUUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 36419 0.69 0.975721
Target:  5'- gGCGGCUGAUGaAGCGGAAgaccaGGCGccGGAGc -3'
miRNA:   3'- -UGCUGGCUGC-UCGCUUU-----UCGU--UCUCc -5'
10982 5' -51 NC_002794.1 + 159287 0.69 0.978158
Target:  5'- uCGACCGACGAGgGcgGAGguGGcAGc -3'
miRNA:   3'- uGCUGGCUGCUCgCuuUUCguUC-UCc -5'
10982 5' -51 NC_002794.1 + 112342 0.69 0.977923
Target:  5'- cCGGCCGGCGgcgccggcggcggGGCGggGAGCugcuGGa -3'
miRNA:   3'- uGCUGGCUGC-------------UCGCuuUUCGuucuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.