Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 119299 | 0.69 | 0.984386 |
Target: 5'- -aGGCCagGGCGAGCuGAcAGAGCucguGGAGGa -3' miRNA: 3'- ugCUGG--CUGCUCG-CU-UUUCGu---UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 112111 | 0.69 | 0.982482 |
Target: 5'- cGCGGCCggGACGAcggcGCGggGAGguAGAucGGc -3' miRNA: 3'- -UGCUGG--CUGCU----CGCuuUUCguUCU--CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 93853 | 0.69 | 0.980409 |
Target: 5'- gACGGCCGcgGCG-GCGAGccgcccGAGUAcGAGGa -3' miRNA: 3'- -UGCUGGC--UGCuCGCUU------UUCGUuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 99563 | 0.69 | 0.980409 |
Target: 5'- cGCGcccuCCG-CGGGCGAGGGGgGugcGGAGGg -3' miRNA: 3'- -UGCu---GGCuGCUCGCUUUUCgU---UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 69590 | 0.69 | 0.974953 |
Target: 5'- cGCGuCgGACGAGCGGGAGGCcgccuccacgaccaAcgcgaGGAGGa -3' miRNA: 3'- -UGCuGgCUGCUCGCUUUUCG--------------U-----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 36419 | 0.69 | 0.975721 |
Target: 5'- gGCGGCUGAUGaAGCGGAAgaccaGGCGccGGAGc -3' miRNA: 3'- -UGCUGGCUGC-UCGCUUU-----UCGU--UCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 78327 | 0.69 | 0.978158 |
Target: 5'- cCGGCgCGACGGGCGGAGGcGCcGGAa- -3' miRNA: 3'- uGCUG-GCUGCUCGCUUUU-CGuUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 134129 | 0.69 | 0.975721 |
Target: 5'- gACGGCgCGGCGAGCGcGGAAGCucGGu- -3' miRNA: 3'- -UGCUG-GCUGCUCGC-UUUUCGuuCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 112342 | 0.69 | 0.977923 |
Target: 5'- cCGGCCGGCGgcgccggcggcggGGCGggGAGCugcuGGa -3' miRNA: 3'- uGCUGGCUGC-------------UCGCuuUUCGuucuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 180408 | 0.69 | 0.974953 |
Target: 5'- -gGACCGACGucGCGuuGAAGCGggccaucucgacacGGAGGc -3' miRNA: 3'- ugCUGGCUGCu-CGCu-UUUCGU--------------UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 9766 | 0.69 | 0.978158 |
Target: 5'- -aGACCGAcccCGGGCaaagugaacacaGAGAAGCGAGGGc -3' miRNA: 3'- ugCUGGCU---GCUCG------------CUUUUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 159287 | 0.69 | 0.978158 |
Target: 5'- uCGACCGACGAGgGcgGAGguGGcAGc -3' miRNA: 3'- uGCUGGCUGCUCgCuuUUCguUC-UCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 66506 | 0.69 | 0.980409 |
Target: 5'- cUGAUCGGCGAGCGAuAGGCcguccccGGGu -3' miRNA: 3'- uGCUGGCUGCUCGCUuUUCGuuc----UCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 84736 | 0.69 | 0.984386 |
Target: 5'- cCGACCGACGGcaacgccaCGAccgGccGCGAGAGGg -3' miRNA: 3'- uGCUGGCUGCUc-------GCU---UuuCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 22309 | 0.68 | 0.987718 |
Target: 5'- cCGACCGaACGGGC--AAGGCGAuAGGu -3' miRNA: 3'- uGCUGGC-UGCUCGcuUUUCGUUcUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 98461 | 0.68 | 0.986128 |
Target: 5'- gACGAgcgUCGACGGGacgGAAGAGCAGGGc- -3' miRNA: 3'- -UGCU---GGCUGCUCg--CUUUUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 62486 | 0.68 | 0.986128 |
Target: 5'- gACGAgCG-CGAGUGGAcGGCGGGcGGc -3' miRNA: 3'- -UGCUgGCuGCUCGCUUuUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 55824 | 0.68 | 0.987718 |
Target: 5'- cGCGcGCUGAUG-GCGAAGAGCAgcuuguAGuGGa -3' miRNA: 3'- -UGC-UGGCUGCuCGCUUUUCGU------UCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 79978 | 0.68 | 0.987718 |
Target: 5'- cCGGCuCGGCGA-CGAgGAGGCGgaGGAGGa -3' miRNA: 3'- uGCUG-GCUGCUcGCU-UUUCGU--UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 140189 | 0.68 | 0.987718 |
Target: 5'- gGCGACggcgucguCGAgGGGCGAcccGGGCcGGAGGa -3' miRNA: 3'- -UGCUG--------GCUgCUCGCUu--UUCGuUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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