miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 130220 0.86 0.304061
Target:  5'- gGCGACCGACGGGCuccuGAGAGGCcucgAGGAGGu -3'
miRNA:   3'- -UGCUGGCUGCUCG----CUUUUCG----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 56323 0.81 0.498914
Target:  5'- gGCGGCCGugGccggcgacgcGGCGAAGAGCAgcucgaAGAGGc -3'
miRNA:   3'- -UGCUGGCugC----------UCGCUUUUCGU------UCUCC- -5'
10982 5' -51 NC_002794.1 + 95781 0.8 0.578862
Target:  5'- gGCGGCCG--GGGCGAGAGGCGcggcGGAGGa -3'
miRNA:   3'- -UGCUGGCugCUCGCUUUUCGU----UCUCC- -5'
10982 5' -51 NC_002794.1 + 109140 0.79 0.619956
Target:  5'- -gGACCGAgGAGgGGGAGGCGGGGGa -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 178043 0.78 0.661196
Target:  5'- cCGGCUGACGGGUGGAgacuggaaGAGCGAGGGa -3'
miRNA:   3'- uGCUGGCUGCUCGCUU--------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 142215 0.77 0.691904
Target:  5'- gGCGGCagCGGCGGuGCGggGAGCGgcGGAGGc -3'
miRNA:   3'- -UGCUG--GCUGCU-CGCuuUUCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 105821 0.76 0.741948
Target:  5'- cGCGACCGggucggucgaGCGAGCGGGAc-CGAGGGGa -3'
miRNA:   3'- -UGCUGGC----------UGCUCGCUUUucGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 104497 0.76 0.751702
Target:  5'- gGCGGCCGGguCGGGCGAGAacgGGCu-GAGGc -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUUU---UCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 145916 0.76 0.780284
Target:  5'- uCGACCGcgcCGAGCGGAGgggccGGCGAGAGcGg -3'
miRNA:   3'- uGCUGGCu--GCUCGCUUU-----UCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 179950 0.75 0.789554
Target:  5'- -gGGCCGGgGAGCGAGcgacAGCAGGAGcGg -3'
miRNA:   3'- ugCUGGCUgCUCGCUUu---UCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 44301 0.75 0.807653
Target:  5'- -gGGCCGGCGAgGCGggGAGCGAccgcGAGc -3'
miRNA:   3'- ugCUGGCUGCU-CGCuuUUCGUU----CUCc -5'
10982 5' -51 NC_002794.1 + 145876 0.75 0.816464
Target:  5'- cGCGACCGGaccGCGAGAAGCGgcgagcgcgacGGGGGa -3'
miRNA:   3'- -UGCUGGCUgcuCGCUUUUCGU-----------UCUCC- -5'
10982 5' -51 NC_002794.1 + 191870 0.75 0.825105
Target:  5'- -aGGCCGGCG-GCGGAGggGGCGgcGGAGGc -3'
miRNA:   3'- ugCUGGCUGCuCGCUUU--UCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 107553 0.74 0.833567
Target:  5'- gACGACCGcggUGGGgGAGGAGgAGGAGGc -3'
miRNA:   3'- -UGCUGGCu--GCUCgCUUUUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 95883 0.74 0.841024
Target:  5'- gGCGAcCCGGCG-GCGAGGGcgcacgacgugguGCGGGAGGu -3'
miRNA:   3'- -UGCU-GGCUGCuCGCUUUU-------------CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 108335 0.74 0.841843
Target:  5'- gGCGGCgcaggaggaggUGGCgGAGCGggGAGCGgaGGAGGa -3'
miRNA:   3'- -UGCUG-----------GCUG-CUCGCuuUUCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 182336 0.74 0.857808
Target:  5'- -gGGCgGGCGAGCGGAcGGGCGGGcGGg -3'
miRNA:   3'- ugCUGgCUGCUCGCUU-UUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 140110 0.73 0.880185
Target:  5'- gGCGAUCGACG-GCGGucgacgguGGGCGGGuGGg -3'
miRNA:   3'- -UGCUGGCUGCuCGCUu-------UUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 126663 0.73 0.880185
Target:  5'- -aGACCGACGGGCcgc-GGCGAGGGc -3'
miRNA:   3'- ugCUGGCUGCUCGcuuuUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 131708 0.73 0.887203
Target:  5'- cCGACCGgaccccgagaGCGAGCGAGcGGGCGAGAu- -3'
miRNA:   3'- uGCUGGC----------UGCUCGCUU-UUCGUUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.