miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 131708 0.73 0.887203
Target:  5'- cCGACCGgaccccgagaGCGAGCGAGcGGGCGAGAu- -3'
miRNA:   3'- uGCUGGC----------UGCUCGCUU-UUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 38098 0.73 0.893991
Target:  5'- cGCGACCGGC--GUGAAGAcGCGGGAGa -3'
miRNA:   3'- -UGCUGGCUGcuCGCUUUU-CGUUCUCc -5'
10982 5' -51 NC_002794.1 + 35859 0.73 0.900547
Target:  5'- cGCGACCGACGA-CGAGAGaacGaacgaGAGAGGc -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUUU---Cg----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 42482 0.73 0.900547
Target:  5'- cGCGcGCCGGggcCGAGCGGAgagugugagaaaGAGCGAGAGa -3'
miRNA:   3'- -UGC-UGGCU---GCUCGCUU------------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 110455 0.72 0.904996
Target:  5'- -aGGCCGGCGAGCcggcucgucggcucGggGGGUAgAGAGGc -3'
miRNA:   3'- ugCUGGCUGCUCG--------------CuuUUCGU-UCUCC- -5'
10982 5' -51 NC_002794.1 + 18251 0.72 0.906867
Target:  5'- cGCGGCCGACcGGCGAcc-GCGAGAu- -3'
miRNA:   3'- -UGCUGGCUGcUCGCUuuuCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 108374 0.72 0.906867
Target:  5'- -nGACCGGgcgccgGAGCGggGAGC-GGAGGc -3'
miRNA:   3'- ugCUGGCUg-----CUCGCuuUUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 125709 0.72 0.912947
Target:  5'- gUGACgGugGAGCGGAGcgaacGGgAGGAGGc -3'
miRNA:   3'- uGCUGgCugCUCGCUUU-----UCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 7805 0.72 0.918787
Target:  5'- cCGACUcgGAUGAG-GAuGAGCGGGAGGg -3'
miRNA:   3'- uGCUGG--CUGCUCgCUuUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 96543 0.72 0.923836
Target:  5'- cGCG-CCGACGAaccggucGaCGAGGAGCGGGAGcGg -3'
miRNA:   3'- -UGCuGGCUGCU-------C-GCUUUUCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 146595 0.72 0.924385
Target:  5'- gACGaaGCUGuCGAGCGAcgAAGGCGGcGAGGa -3'
miRNA:   3'- -UGC--UGGCuGCUCGCU--UUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 94048 0.72 0.924385
Target:  5'- aGCGG-CGGCGGuGCGggGgcGGCGGGGGGc -3'
miRNA:   3'- -UGCUgGCUGCU-CGCuuU--UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 137744 0.72 0.924385
Target:  5'- -gGGCCGACGcuuggaacggcGGCucGAAGAGCAGGAuGGg -3'
miRNA:   3'- ugCUGGCUGC-----------UCG--CUUUUCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 98351 0.72 0.929215
Target:  5'- uACGACCGGcCGAucgccgcGCGGcuGGCGGGAGa -3'
miRNA:   3'- -UGCUGGCU-GCU-------CGCUuuUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 135634 0.72 0.92974
Target:  5'- gACG-UCGGCGAacaacagcGCGGAGGGUggGGGGg -3'
miRNA:   3'- -UGCuGGCUGCU--------CGCUUUUCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 191912 0.72 0.92974
Target:  5'- -gGACCGGCugaaucGGCGAAGA-CGAGAGGa -3'
miRNA:   3'- ugCUGGCUGc-----UCGCUUUUcGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 156424 0.71 0.932836
Target:  5'- cACGGCCGGCGGGUGAgaGAccggucgcgccgaaGGCGguugguuAGGGGg -3'
miRNA:   3'- -UGCUGGCUGCUCGCU--UU--------------UCGU-------UCUCC- -5'
10982 5' -51 NC_002794.1 + 65181 0.71 0.934851
Target:  5'- -aGACCGGCGGGUGcc-GGCGAGGucGGa -3'
miRNA:   3'- ugCUGGCUGCUCGCuuuUCGUUCU--CC- -5'
10982 5' -51 NC_002794.1 + 185625 0.71 0.939721
Target:  5'- aGCGA-CGGCGAGCGAGAcuCGAGcGGc -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUUucGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 40516 0.71 0.94435
Target:  5'- cACGGCCGcCGAcGCGccgacGGGAGaCGAGGGGg -3'
miRNA:   3'- -UGCUGGCuGCU-CGC-----UUUUC-GUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.