miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 96760 0.71 0.94435
Target:  5'- aGCGGCCGGCGGuCGAGucGCccGGGGu -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuuCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 118326 0.71 0.948739
Target:  5'- cGCGACgGGCG-GCGAgaAGAGCAGGucGc -3'
miRNA:   3'- -UGCUGgCUGCuCGCU--UUUCGUUCucC- -5'
10982 5' -51 NC_002794.1 + 103876 0.71 0.948739
Target:  5'- aGCGACgagagCGACGAgaGCGAcGAGCAGcGGGGc -3'
miRNA:   3'- -UGCUG-----GCUGCU--CGCUuUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 55236 0.71 0.948739
Target:  5'- gACGACgaugaagaCGACGAGgaggacgcCGAAGAGCcGGGGGg -3'
miRNA:   3'- -UGCUG--------GCUGCUC--------GCUUUUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 72750 0.71 0.948739
Target:  5'- gGCGGCCGccgacCGAGCGGAucuuaaauAGCGAGAa- -3'
miRNA:   3'- -UGCUGGCu----GCUCGCUUu-------UCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 112500 0.71 0.948739
Target:  5'- cACGuACCG-CGAGCGGucgcggugcuGgcGCAGGAGGu -3'
miRNA:   3'- -UGC-UGGCuGCUCGCU----------UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 192961 0.71 0.952893
Target:  5'- -aGGCCGACGAGCcgu--GCAGGAccaGGg -3'
miRNA:   3'- ugCUGGCUGCUCGcuuuuCGUUCU---CC- -5'
10982 5' -51 NC_002794.1 + 105873 0.71 0.952893
Target:  5'- gGCG-CCGAgGAcGUGggGGGUggGAGAGGa -3'
miRNA:   3'- -UGCuGGCUgCU-CGCuuUUCG--UUCUCC- -5'
10982 5' -51 NC_002794.1 + 10653 0.71 0.952893
Target:  5'- cGCGAgcCCGACGAGCGucuGGAGCcgccuGAGc -3'
miRNA:   3'- -UGCU--GGCUGCUCGCu--UUUCGuu---CUCc -5'
10982 5' -51 NC_002794.1 + 86744 0.7 0.956814
Target:  5'- cCGACCgcGACGAGCGAAGccGGguGGAu- -3'
miRNA:   3'- uGCUGG--CUGCUCGCUUU--UCguUCUcc -5'
10982 5' -51 NC_002794.1 + 115964 0.7 0.960507
Target:  5'- -gGACCGugGGGgGG--AGCGGGAcGGg -3'
miRNA:   3'- ugCUGGCugCUCgCUuuUCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 185467 0.7 0.960507
Target:  5'- aACG-CCG-CGGGCGGcggccgcGGCGAGGGGa -3'
miRNA:   3'- -UGCuGGCuGCUCGCUuu-----UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 121731 0.7 0.960507
Target:  5'- gACGACgaCGACGAGCacggcGGCGAGAcGGa -3'
miRNA:   3'- -UGCUG--GCUGCUCGcuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 129210 0.7 0.960507
Target:  5'- aGCGGCCGACG-GCGGuggauAGGCGcGAacGGg -3'
miRNA:   3'- -UGCUGGCUGCuCGCUu----UUCGUuCU--CC- -5'
10982 5' -51 NC_002794.1 + 10885 0.7 0.960507
Target:  5'- gACGACgGGCGGGCGGAGguguuucgccacGGCAaccuGGuGGu -3'
miRNA:   3'- -UGCUGgCUGCUCGCUUU------------UCGU----UCuCC- -5'
10982 5' -51 NC_002794.1 + 180696 0.7 0.960507
Target:  5'- gGCGcCCGGCGGGCGGAccauGGCucGGGu -3'
miRNA:   3'- -UGCuGGCUGCUCGCUUu---UCGuuCUCc -5'
10982 5' -51 NC_002794.1 + 62706 0.7 0.960507
Target:  5'- gGCGGCCGcCGAcGCGAcccAGCGAGAc- -3'
miRNA:   3'- -UGCUGGCuGCU-CGCUuu-UCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 123699 0.7 0.963975
Target:  5'- cGCGACUGGCGGGCGu-GAGCGc---- -3'
miRNA:   3'- -UGCUGGCUGCUCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 152533 0.7 0.963975
Target:  5'- uACGACCGccuguGCGAcuGCGAAGAGUgccAGGAGcGg -3'
miRNA:   3'- -UGCUGGC-----UGCU--CGCUUUUCG---UUCUC-C- -5'
10982 5' -51 NC_002794.1 + 116036 0.7 0.963975
Target:  5'- -gGACCGGaGAG-GAGAGcGCAGGGGGg -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUU-CGUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.