miRNA display CGI


Results 61 - 80 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 55358 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 141329 0.7 0.967225
Target:  5'- uCGGCUcgguGGCGAGCGAAGA-CGAGAGc -3'
miRNA:   3'- uGCUGG----CUGCUCGCUUUUcGUUCUCc -5'
10982 5' -51 NC_002794.1 + 149449 0.7 0.967225
Target:  5'- uCGAUCucggggaagggGGCGGuCGAGGAGCGAGGGGg -3'
miRNA:   3'- uGCUGG-----------CUGCUcGCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 158099 0.7 0.967225
Target:  5'- -gGAUCGugGGGCGGucgcgccguAGCGGGAGa -3'
miRNA:   3'- ugCUGGCugCUCGCUuu-------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 55394 0.7 0.967225
Target:  5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3'
miRNA:   3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 99351 0.7 0.967225
Target:  5'- gGCGAUCcgucgguugGACGAa-GAGAAGCGGGAGGu -3'
miRNA:   3'- -UGCUGG---------CUGCUcgCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 187796 0.7 0.967225
Target:  5'- aACGGCCcGCGaAGCGAGcGAGCGAGuGa -3'
miRNA:   3'- -UGCUGGcUGC-UCGCUU-UUCGUUCuCc -5'
10982 5' -51 NC_002794.1 + 69746 0.7 0.973092
Target:  5'- cACGGCCGGCGAcgccGCGggGauGGCGAcGAa- -3'
miRNA:   3'- -UGCUGGCUGCU----CGCuuU--UCGUU-CUcc -5'
10982 5' -51 NC_002794.1 + 109165 0.7 0.973092
Target:  5'- gAUGG-CGACGAGCGGcgguAGCGgcGGAGGc -3'
miRNA:   3'- -UGCUgGCUGCUCGCUuu--UCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 106356 0.7 0.973092
Target:  5'- gACGGCgGGCGGGCGccgguucGCGcGGAGGg -3'
miRNA:   3'- -UGCUGgCUGCUCGCuuuu---CGU-UCUCC- -5'
10982 5' -51 NC_002794.1 + 4041 0.7 0.973092
Target:  5'- aGCGACCGGCaucauGAGCGAcccccgcGGCAAuGGGu -3'
miRNA:   3'- -UGCUGGCUG-----CUCGCUuu-----UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 94279 0.7 0.973092
Target:  5'- cGCGGCgCGGCccGAGCGggGGGCGGcucGGGc -3'
miRNA:   3'- -UGCUG-GCUG--CUCGCuuUUCGUUc--UCC- -5'
10982 5' -51 NC_002794.1 + 180408 0.69 0.974953
Target:  5'- -gGACCGACGucGCGuuGAAGCGggccaucucgacacGGAGGc -3'
miRNA:   3'- ugCUGGCUGCu-CGCu-UUUCGU--------------UCUCC- -5'
10982 5' -51 NC_002794.1 + 69590 0.69 0.974953
Target:  5'- cGCGuCgGACGAGCGGGAGGCcgccuccacgaccaAcgcgaGGAGGa -3'
miRNA:   3'- -UGCuGgCUGCUCGCUUUUCG--------------U-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 36419 0.69 0.975721
Target:  5'- gGCGGCUGAUGaAGCGGAAgaccaGGCGccGGAGc -3'
miRNA:   3'- -UGCUGGCUGC-UCGCUUU-----UCGU--UCUCc -5'
10982 5' -51 NC_002794.1 + 134129 0.69 0.975721
Target:  5'- gACGGCgCGGCGAGCGcGGAAGCucGGu- -3'
miRNA:   3'- -UGCUG-GCUGCUCGC-UUUUCGuuCUcc -5'
10982 5' -51 NC_002794.1 + 112342 0.69 0.977923
Target:  5'- cCGGCCGGCGgcgccggcggcggGGCGggGAGCugcuGGa -3'
miRNA:   3'- uGCUGGCUGC-------------UCGCuuUUCGuucuCC- -5'
10982 5' -51 NC_002794.1 + 159287 0.69 0.978158
Target:  5'- uCGACCGACGAGgGcgGAGguGGcAGc -3'
miRNA:   3'- uGCUGGCUGCUCgCuuUUCguUC-UCc -5'
10982 5' -51 NC_002794.1 + 78327 0.69 0.978158
Target:  5'- cCGGCgCGACGGGCGGAGGcGCcGGAa- -3'
miRNA:   3'- uGCUG-GCUGCUCGCUUUU-CGuUCUcc -5'
10982 5' -51 NC_002794.1 + 141828 0.69 0.978158
Target:  5'- gACGA-CGACGAGCGGAucGCucGGcGGu -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUuuCGuuCU-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.