Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 141828 | 0.69 | 0.978158 |
Target: 5'- gACGA-CGACGAGCGGAucGCucGGcGGu -3' miRNA: 3'- -UGCUgGCUGCUCGCUUuuCGuuCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 93853 | 0.69 | 0.980409 |
Target: 5'- gACGGCCGcgGCG-GCGAGccgcccGAGUAcGAGGa -3' miRNA: 3'- -UGCUGGC--UGCuCGCUU------UUCGUuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 99563 | 0.69 | 0.980409 |
Target: 5'- cGCGcccuCCG-CGGGCGAGGGGgGugcGGAGGg -3' miRNA: 3'- -UGCu---GGCuGCUCGCUUUUCgU---UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 66506 | 0.69 | 0.980409 |
Target: 5'- cUGAUCGGCGAGCGAuAGGCcguccccGGGu -3' miRNA: 3'- uGCUGGCUGCUCGCUuUUCGuuc----UCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 112111 | 0.69 | 0.982482 |
Target: 5'- cGCGGCCggGACGAcggcGCGggGAGguAGAucGGc -3' miRNA: 3'- -UGCUGG--CUGCU----CGCuuUUCguUCU--CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 91754 | 0.69 | 0.982482 |
Target: 5'- --uGCCGGCGGGCGGcaccgcGCAGGAcGGg -3' miRNA: 3'- ugcUGGCUGCUCGCUuuu---CGUUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 178270 | 0.69 | 0.984203 |
Target: 5'- cUGACCGGagacggggucgguCGAGCGAcggcucGAcGCGGGAGGc -3' miRNA: 3'- uGCUGGCU-------------GCUCGCU------UUuCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 84736 | 0.69 | 0.984386 |
Target: 5'- cCGACCGACGGcaacgccaCGAccgGccGCGAGAGGg -3' miRNA: 3'- uGCUGGCUGCUc-------GCU---UuuCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 119299 | 0.69 | 0.984386 |
Target: 5'- -aGGCCagGGCGAGCuGAcAGAGCucguGGAGGa -3' miRNA: 3'- ugCUGG--CUGCUCG-CU-UUUCGu---UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 103663 | 0.69 | 0.984386 |
Target: 5'- gGCGuGCCGguGCGAGUGGAAguggaagggcAGCGAGAuGGc -3' miRNA: 3'- -UGC-UGGC--UGCUCGCUUU----------UCGUUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 141657 | 0.69 | 0.984386 |
Target: 5'- cGCGGCCGcCG-GCGGGucGAGCgAAGAcGGg -3' miRNA: 3'- -UGCUGGCuGCuCGCUU--UUCG-UUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 181431 | 0.69 | 0.984386 |
Target: 5'- cGCGaaGCCGuCG-GCGAGGGGCcgcccGGAGGa -3' miRNA: 3'- -UGC--UGGCuGCuCGCUUUUCGu----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 145592 | 0.69 | 0.984386 |
Target: 5'- gGCGGCCGGCucccGCGGAGucgggcGCGAcGAGGa -3' miRNA: 3'- -UGCUGGCUGcu--CGCUUUu-----CGUU-CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 118988 | 0.69 | 0.984386 |
Target: 5'- cACGuCCGG-GcGCGggGAGaCGAGGGGg -3' miRNA: 3'- -UGCuGGCUgCuCGCuuUUC-GUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 62486 | 0.68 | 0.986128 |
Target: 5'- gACGAgCG-CGAGUGGAcGGCGGGcGGc -3' miRNA: 3'- -UGCUgGCuGCUCGCUUuUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 37529 | 0.68 | 0.986128 |
Target: 5'- cACGucCCGGCuGGCGAAcAGCcgccGGAGGg -3' miRNA: 3'- -UGCu-GGCUGcUCGCUUuUCGu---UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 98461 | 0.68 | 0.986128 |
Target: 5'- gACGAgcgUCGACGGGacgGAAGAGCAGGGc- -3' miRNA: 3'- -UGCU---GGCUGCUCg--CUUUUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 55824 | 0.68 | 0.987718 |
Target: 5'- cGCGcGCUGAUG-GCGAAGAGCAgcuuguAGuGGa -3' miRNA: 3'- -UGC-UGGCUGCuCGCUUUUCGU------UCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 79978 | 0.68 | 0.987718 |
Target: 5'- cCGGCuCGGCGA-CGAgGAGGCGgaGGAGGa -3' miRNA: 3'- uGCUG-GCUGCUcGCU-UUUCGU--UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 22309 | 0.68 | 0.987718 |
Target: 5'- cCGACCGaACGGGC--AAGGCGAuAGGu -3' miRNA: 3'- uGCUGGC-UGCUCGcuUUUCGUUcUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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