miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 94144 0.66 0.997044
Target:  5'- cCGACCGcgGCGGcGCuGGAcGGUggGGGGg -3'
miRNA:   3'- uGCUGGC--UGCU-CG-CUUuUCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 75060 0.66 0.997044
Target:  5'- cGCGACCGACG-GCGuc-GGCAc---- -3'
miRNA:   3'- -UGCUGGCUGCuCGCuuuUCGUucucc -5'
10982 5' -51 NC_002794.1 + 115836 0.66 0.997044
Target:  5'- gGCGGggcCCGGCGGGCucgggccuGGGAcgcGCGAGGGGu -3'
miRNA:   3'- -UGCU---GGCUGCUCG--------CUUUu--CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 106256 0.66 0.996996
Target:  5'- cGCGaACCGGCGAGCGccgcgcgucGcgccgccucggacGGCGAGAGa -3'
miRNA:   3'- -UGC-UGGCUGCUCGCuu-------U-------------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 121802 0.66 0.996946
Target:  5'- cGCGACCGGCcGGCGccugccgcuGCAGGAu- -3'
miRNA:   3'- -UGCUGGCUGcUCGCuuuu-----CGUUCUcc -5'
10982 5' -51 NC_002794.1 + 31737 0.66 0.996528
Target:  5'- -aGACCgGGCGGGCGAacGAAGCGGu--- -3'
miRNA:   3'- ugCUGG-CUGCUCGCU--UUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 44729 0.66 0.996528
Target:  5'- uCGGCCGGCGccgcCGGAGGGCuAAGAcGGc -3'
miRNA:   3'- uGCUGGCUGCuc--GCUUUUCG-UUCU-CC- -5'
10982 5' -51 NC_002794.1 + 114563 0.66 0.996528
Target:  5'- uCGGCCaGGCGcAGCGuc-AGC-GGAGGg -3'
miRNA:   3'- uGCUGG-CUGC-UCGCuuuUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 94215 0.66 0.996528
Target:  5'- gUGACgGugGcGGCGAcgGGCGGGcGGg -3'
miRNA:   3'- uGCUGgCugC-UCGCUuuUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 117302 0.66 0.996528
Target:  5'- uGCGGCgUGuCGAGCGAcuggAAGGUGGcGAGGa -3'
miRNA:   3'- -UGCUG-GCuGCUCGCU----UUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 127638 0.66 0.996528
Target:  5'- gACG-CCGACGAcCGAGAcccGaCGGGGGGg -3'
miRNA:   3'- -UGCuGGCUGCUcGCUUUu--C-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 18516 0.66 0.996528
Target:  5'- cGCGACCG-CGAacgcggccGCGAAcgcGAGCAcGAGc -3'
miRNA:   3'- -UGCUGGCuGCU--------CGCUU---UUCGUuCUCc -5'
10982 5' -51 NC_002794.1 + 3742 0.66 0.996528
Target:  5'- cGCGACCGcaACGcGCGucacGGCGGGGcGGg -3'
miRNA:   3'- -UGCUGGC--UGCuCGCuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 140028 0.66 0.996528
Target:  5'- cGCGGCCcccGCGGGCGGcgGGAGacacggaAAGGGGc -3'
miRNA:   3'- -UGCUGGc--UGCUCGCU--UUUCg------UUCUCC- -5'
10982 5' -51 NC_002794.1 + 145324 0.66 0.996472
Target:  5'- cGCGGCgGGCggcgcucgggcccGAGCGGGcccGAGCuGGGGGu -3'
miRNA:   3'- -UGCUGgCUG-------------CUCGCUU---UUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 14539 0.66 0.996359
Target:  5'- cACGGCgcucucgcccccguCGACGcGCGGGAGGCGAGccGGc -3'
miRNA:   3'- -UGCUG--------------GCUGCuCGCUUUUCGUUCu-CC- -5'
10982 5' -51 NC_002794.1 + 47992 0.67 0.995939
Target:  5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3'
miRNA:   3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5'
10982 5' -51 NC_002794.1 + 70273 0.67 0.995939
Target:  5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3'
miRNA:   3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5'
10982 5' -51 NC_002794.1 + 84017 0.67 0.995939
Target:  5'- cACGACgGgcACGAGCGAc--GCGAGcGGc -3'
miRNA:   3'- -UGCUGgC--UGCUCGCUuuuCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 100349 0.67 0.995939
Target:  5'- uCGACCGcCGAGCuGGAGGUGGacugcGAGGu -3'
miRNA:   3'- uGCUGGCuGCUCGcUUUUCGUU-----CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.