miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 47992 0.67 0.995939
Target:  5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3'
miRNA:   3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5'
10982 5' -51 NC_002794.1 + 185351 0.67 0.995939
Target:  5'- cGCGcGCCGccGCGAGCGGGccgaacgccgcGAGCGAGGc- -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUU-----------UUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 56040 0.67 0.995271
Target:  5'- aGCGGCaGAaGAGCGu-GGGCAGGuGGa -3'
miRNA:   3'- -UGCUGgCUgCUCGCuuUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 108474 0.67 0.995271
Target:  5'- -gGGCCGAgGGGCGAccGGcCAAGAu- -3'
miRNA:   3'- ugCUGGCUgCUCGCUuuUC-GUUCUcc -5'
10982 5' -51 NC_002794.1 + 136117 0.67 0.994516
Target:  5'- uGC-ACCuGGCGGGCGAagucGAAG-AGGAGGg -3'
miRNA:   3'- -UGcUGG-CUGCUCGCU----UUUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 24819 0.67 0.994516
Target:  5'- cGCGACCGACGA-CGGGu--CAcGGGGa -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuucGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 66959 0.67 0.994516
Target:  5'- -aGGCCGGCGAGuCGcuc-GCcGGGGGa -3'
miRNA:   3'- ugCUGGCUGCUC-GCuuuuCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 101589 0.67 0.994516
Target:  5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 129075 0.67 0.994516
Target:  5'- cGCGGCUGGCG-GCGGAccguccGGUggGuGGa -3'
miRNA:   3'- -UGCUGGCUGCuCGCUUu-----UCGuuCuCC- -5'
10982 5' -51 NC_002794.1 + 105550 0.67 0.994436
Target:  5'- gGCGGCUcgGGCGAacggauagggugcGCGuAGAGCAGGAGc -3'
miRNA:   3'- -UGCUGG--CUGCU-------------CGCuUUUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 76677 0.67 0.994436
Target:  5'- cACG-CCGACGgcgcaGGCGAacaccgcAAAGUuuAAGAGGa -3'
miRNA:   3'- -UGCuGGCUGC-----UCGCU-------UUUCG--UUCUCC- -5'
10982 5' -51 NC_002794.1 + 148083 0.67 0.993667
Target:  5'- gUGGCCu-CGAGCGAGGAGCAGc--- -3'
miRNA:   3'- uGCUGGcuGCUCGCUUUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 53790 0.67 0.993667
Target:  5'- cGCGcCCGGCGgguuucucGGCGGGAgccucGGCGGGAGc -3'
miRNA:   3'- -UGCuGGCUGC--------UCGCUUU-----UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 104709 0.67 0.993667
Target:  5'- -aGACCGGCGuGCacGAGAGguAGAuGGg -3'
miRNA:   3'- ugCUGGCUGCuCGc-UUUUCguUCU-CC- -5'
10982 5' -51 NC_002794.1 + 66749 0.67 0.993667
Target:  5'- gGCGGCgCGuACGAccGCuGGAccAGCGAGAGGa -3'
miRNA:   3'- -UGCUG-GC-UGCU--CGcUUU--UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 91216 0.67 0.993667
Target:  5'- gGCGACgCGACG-GCGGAcGGCGcGGcGGc -3'
miRNA:   3'- -UGCUG-GCUGCuCGCUUuUCGUuCU-CC- -5'
10982 5' -51 NC_002794.1 + 122490 0.67 0.993667
Target:  5'- -gGGCUGaACGAGuCGGcgccGCAGGAGGg -3'
miRNA:   3'- ugCUGGC-UGCUC-GCUuuu-CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 137930 0.67 0.992715
Target:  5'- cGCGGUCGAUGAGCuGGAGGCAgcGGcGGa -3'
miRNA:   3'- -UGCUGGCUGCUCGcUUUUCGU--UCuCC- -5'
10982 5' -51 NC_002794.1 + 139822 0.67 0.992715
Target:  5'- -gGACCugGACGA-CGAAGAcCAAGAGGu -3'
miRNA:   3'- ugCUGG--CUGCUcGCUUUUcGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 5801 0.67 0.992715
Target:  5'- cUGACCGuCG-GUGAGAccccGGUggGGGGg -3'
miRNA:   3'- uGCUGGCuGCuCGCUUU----UCGuuCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.