miRNA display CGI


Results 61 - 80 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 137930 0.67 0.992715
Target:  5'- cGCGGUCGAUGAGCuGGAGGCAgcGGcGGa -3'
miRNA:   3'- -UGCUGGCUGCUCGcUUUUCGU--UCuCC- -5'
10982 5' -51 NC_002794.1 + 146743 0.67 0.992715
Target:  5'- gACGACgGGCc-GCGGAucGgGGGAGGg -3'
miRNA:   3'- -UGCUGgCUGcuCGCUUuuCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 66255 0.67 0.992408
Target:  5'- gGCGACCcguccggccccguaGACGAGCgGAGGGGUccGAGc -3'
miRNA:   3'- -UGCUGG--------------CUGCUCG-CUUUUCGuuCUCc -5'
10982 5' -51 NC_002794.1 + 64684 0.68 0.991653
Target:  5'- cUGugCGACGAcgGCGAGgcGAGCGcggacGAGGa -3'
miRNA:   3'- uGCugGCUGCU--CGCUU--UUCGUu----CUCC- -5'
10982 5' -51 NC_002794.1 + 182263 0.68 0.991653
Target:  5'- aGCGcGCCGAguccCGAGCGGccucccaugacGGGGCGGGuGGa -3'
miRNA:   3'- -UGC-UGGCU----GCUCGCU-----------UUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 142350 0.68 0.991653
Target:  5'- gGCGGCgGAgGcGGCGGAGgcGGCGgaggcGGAGGg -3'
miRNA:   3'- -UGCUGgCUgC-UCGCUUU--UCGU-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 95825 0.68 0.991653
Target:  5'- gGCGGCCgGGgGAGCGGcggcGGCGgccggGGAGGc -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUuu--UCGU-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 87088 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 38136 0.68 0.990471
Target:  5'- -gGGgCGugGAGUc--GAGCAGGAGGu -3'
miRNA:   3'- ugCUgGCugCUCGcuuUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 87130 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 115881 0.68 0.990471
Target:  5'- gGCGuCCGggGCGuccGCGGAgcGCGGGGGGu -3'
miRNA:   3'- -UGCuGGC--UGCu--CGCUUuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 101496 0.68 0.990471
Target:  5'- gGCGGCCGGucCGAGCGGugcGGCAcacgccGGcGGGg -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUuu-UCGU------UC-UCC- -5'
10982 5' -51 NC_002794.1 + 87256 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87214 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87172 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 37752 0.68 0.989163
Target:  5'- gGCGGCgCGGCG-GCGcc-GGCGGGAGcGg -3'
miRNA:   3'- -UGCUG-GCUGCuCGCuuuUCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 112320 0.68 0.989163
Target:  5'- gGCG-CCGACG-GCGggGAGCGc---- -3'
miRNA:   3'- -UGCuGGCUGCuCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 107943 0.68 0.989163
Target:  5'- aGCGGCUGGCucgcuacccGcGCGAGAAGCuGGAGa -3'
miRNA:   3'- -UGCUGGCUG---------CuCGCUUUUCGuUCUCc -5'
10982 5' -51 NC_002794.1 + 103577 0.68 0.989163
Target:  5'- gUGGCCGACGAgcaGCGGucGGGCAGGcAGcGg -3'
miRNA:   3'- uGCUGGCUGCU---CGCUu-UUCGUUC-UC-C- -5'
10982 5' -51 NC_002794.1 + 29914 0.68 0.988166
Target:  5'- -gGACCGACGAcgggcaGCGAcgagccgccguccggGAAGCGgcaccuagcagacGGAGGg -3'
miRNA:   3'- ugCUGGCUGCU------CGCU---------------UUUCGU-------------UCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.