Results 101 - 120 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 141828 | 0.69 | 0.978158 |
Target: 5'- gACGA-CGACGAGCGGAucGCucGGcGGu -3' miRNA: 3'- -UGCUgGCUGCUCGCUUuuCGuuCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 78327 | 0.69 | 0.978158 |
Target: 5'- cCGGCgCGACGGGCGGAGGcGCcGGAa- -3' miRNA: 3'- uGCUG-GCUGCUCGCUUUU-CGuUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 159287 | 0.69 | 0.978158 |
Target: 5'- uCGACCGACGAGgGcgGAGguGGcAGc -3' miRNA: 3'- uGCUGGCUGCUCgCuuUUCguUC-UCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 9766 | 0.69 | 0.978158 |
Target: 5'- -aGACCGAcccCGGGCaaagugaacacaGAGAAGCGAGGGc -3' miRNA: 3'- ugCUGGCU---GCUCG------------CUUUUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 112342 | 0.69 | 0.977923 |
Target: 5'- cCGGCCGGCGgcgccggcggcggGGCGggGAGCugcuGGa -3' miRNA: 3'- uGCUGGCUGC-------------UCGCuuUUCGuucuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 36419 | 0.69 | 0.975721 |
Target: 5'- gGCGGCUGAUGaAGCGGAAgaccaGGCGccGGAGc -3' miRNA: 3'- -UGCUGGCUGC-UCGCUUU-----UCGU--UCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 134129 | 0.69 | 0.975721 |
Target: 5'- gACGGCgCGGCGAGCGcGGAAGCucGGu- -3' miRNA: 3'- -UGCUG-GCUGCUCGC-UUUUCGuuCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 180408 | 0.69 | 0.974953 |
Target: 5'- -gGACCGACGucGCGuuGAAGCGggccaucucgacacGGAGGc -3' miRNA: 3'- ugCUGGCUGCu-CGCu-UUUCGU--------------UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 69590 | 0.69 | 0.974953 |
Target: 5'- cGCGuCgGACGAGCGGGAGGCcgccuccacgaccaAcgcgaGGAGGa -3' miRNA: 3'- -UGCuGgCUGCUCGCUUUUCG--------------U-----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 69746 | 0.7 | 0.973092 |
Target: 5'- cACGGCCGGCGAcgccGCGggGauGGCGAcGAa- -3' miRNA: 3'- -UGCUGGCUGCU----CGCuuU--UCGUU-CUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 94279 | 0.7 | 0.973092 |
Target: 5'- cGCGGCgCGGCccGAGCGggGGGCGGcucGGGc -3' miRNA: 3'- -UGCUG-GCUG--CUCGCuuUUCGUUc--UCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 4041 | 0.7 | 0.973092 |
Target: 5'- aGCGACCGGCaucauGAGCGAcccccgcGGCAAuGGGu -3' miRNA: 3'- -UGCUGGCUG-----CUCGCUuu-----UCGUUcUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 106356 | 0.7 | 0.973092 |
Target: 5'- gACGGCgGGCGGGCGccgguucGCGcGGAGGg -3' miRNA: 3'- -UGCUGgCUGCUCGCuuuu---CGU-UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 109165 | 0.7 | 0.973092 |
Target: 5'- gAUGG-CGACGAGCGGcgguAGCGgcGGAGGc -3' miRNA: 3'- -UGCUgGCUGCUCGCUuu--UCGU--UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 55394 | 0.7 | 0.967225 |
Target: 5'- gGCGGCCGA--GGCGGccGAGGCGGccGAGGc -3' miRNA: 3'- -UGCUGGCUgcUCGCU--UUUCGUU--CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 158099 | 0.7 | 0.967225 |
Target: 5'- -gGAUCGugGGGCGGucgcgccguAGCGGGAGa -3' miRNA: 3'- ugCUGGCugCUCGCUuu-------UCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 187796 | 0.7 | 0.967225 |
Target: 5'- aACGGCCcGCGaAGCGAGcGAGCGAGuGa -3' miRNA: 3'- -UGCUGGcUGC-UCGCUU-UUCGUUCuCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 149449 | 0.7 | 0.967225 |
Target: 5'- uCGAUCucggggaagggGGCGGuCGAGGAGCGAGGGGg -3' miRNA: 3'- uGCUGG-----------CUGCUcGCUUUUCGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 141329 | 0.7 | 0.967225 |
Target: 5'- uCGGCUcgguGGCGAGCGAAGA-CGAGAGc -3' miRNA: 3'- uGCUGG----CUGCUCGCUUUUcGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 99351 | 0.7 | 0.967225 |
Target: 5'- gGCGAUCcgucgguugGACGAa-GAGAAGCGGGAGGu -3' miRNA: 3'- -UGCUGG---------CUGCUcgCUUUUCGUUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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