miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 3742 0.66 0.996528
Target:  5'- cGCGACCGcaACGcGCGucacGGCGGGGcGGg -3'
miRNA:   3'- -UGCUGGC--UGCuCGCuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 4041 0.7 0.973092
Target:  5'- aGCGACCGGCaucauGAGCGAcccccgcGGCAAuGGGu -3'
miRNA:   3'- -UGCUGGCUG-----CUCGCUuu-----UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 5801 0.67 0.992715
Target:  5'- cUGACCGuCG-GUGAGAccccGGUggGGGGg -3'
miRNA:   3'- uGCUGGCuGCuCGCUUU----UCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 7805 0.72 0.918787
Target:  5'- cCGACUcgGAUGAG-GAuGAGCGGGAGGg -3'
miRNA:   3'- uGCUGG--CUGCUCgCUuUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 9766 0.69 0.978158
Target:  5'- -aGACCGAcccCGGGCaaagugaacacaGAGAAGCGAGGGc -3'
miRNA:   3'- ugCUGGCU---GCUCG------------CUUUUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 10653 0.71 0.952893
Target:  5'- cGCGAgcCCGACGAGCGucuGGAGCcgccuGAGc -3'
miRNA:   3'- -UGCU--GGCUGCUCGCu--UUUCGuu---CUCc -5'
10982 5' -51 NC_002794.1 + 10885 0.7 0.960507
Target:  5'- gACGACgGGCGGGCGGAGguguuucgccacGGCAaccuGGuGGu -3'
miRNA:   3'- -UGCUGgCUGCUCGCUUU------------UCGU----UCuCC- -5'
10982 5' -51 NC_002794.1 + 12707 0.66 0.998227
Target:  5'- uCGGCCGugGGcugcGCGuuccgcGGCGAcGAGGg -3'
miRNA:   3'- uGCUGGCugCU----CGCuuu---UCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 13314 0.66 0.997496
Target:  5'- cCGcCCGGCGAGCGAcGaccgcucccccGGUcGGGGGu -3'
miRNA:   3'- uGCuGGCUGCUCGCUuU-----------UCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 14539 0.66 0.996359
Target:  5'- cACGGCgcucucgcccccguCGACGcGCGGGAGGCGAGccGGc -3'
miRNA:   3'- -UGCUG--------------GCUGCuCGCUUUUCGUUCu-CC- -5'
10982 5' -51 NC_002794.1 + 18251 0.72 0.906867
Target:  5'- cGCGGCCGACcGGCGAcc-GCGAGAu- -3'
miRNA:   3'- -UGCUGGCUGcUCGCUuuuCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 18516 0.66 0.996528
Target:  5'- cGCGACCG-CGAacgcggccGCGAAcgcGAGCAcGAGc -3'
miRNA:   3'- -UGCUGGCuGCU--------CGCUU---UUCGUuCUCc -5'
10982 5' -51 NC_002794.1 + 22309 0.68 0.987718
Target:  5'- cCGACCGaACGGGC--AAGGCGAuAGGu -3'
miRNA:   3'- uGCUGGC-UGCUCGcuUUUCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 24819 0.67 0.994516
Target:  5'- cGCGACCGACGA-CGGGu--CAcGGGGa -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuucGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 29914 0.68 0.988166
Target:  5'- -gGACCGACGAcgggcaGCGAcgagccgccguccggGAAGCGgcaccuagcagacGGAGGg -3'
miRNA:   3'- ugCUGGCUGCU------CGCU---------------UUUCGU-------------UCUCC- -5'
10982 5' -51 NC_002794.1 + 31737 0.66 0.996528
Target:  5'- -aGACCgGGCGGGCGAacGAAGCGGu--- -3'
miRNA:   3'- ugCUGG-CUGCUCGCU--UUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 35859 0.73 0.900547
Target:  5'- cGCGACCGACGA-CGAGAGaacGaacgaGAGAGGc -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUUU---Cg----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 36419 0.69 0.975721
Target:  5'- gGCGGCUGAUGaAGCGGAAgaccaGGCGccGGAGc -3'
miRNA:   3'- -UGCUGGCUGC-UCGCUUU-----UCGU--UCUCc -5'
10982 5' -51 NC_002794.1 + 37529 0.68 0.986128
Target:  5'- cACGucCCGGCuGGCGAAcAGCcgccGGAGGg -3'
miRNA:   3'- -UGCu-GGCUGcUCGCUUuUCGu---UCUCC- -5'
10982 5' -51 NC_002794.1 + 37752 0.68 0.989163
Target:  5'- gGCGGCgCGGCG-GCGcc-GGCGGGAGcGg -3'
miRNA:   3'- -UGCUG-GCUGCuCGCuuuUCGUUCUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.