miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 64684 0.68 0.991653
Target:  5'- cUGugCGACGAcgGCGAGgcGAGCGcggacGAGGa -3'
miRNA:   3'- uGCugGCUGCU--CGCUU--UUCGUu----CUCC- -5'
10982 5' -51 NC_002794.1 + 64803 0.66 0.998227
Target:  5'- gGCGAgCGACGccGCGGAcGGCGGcGAGc -3'
miRNA:   3'- -UGCUgGCUGCu-CGCUUuUCGUU-CUCc -5'
10982 5' -51 NC_002794.1 + 65181 0.71 0.934851
Target:  5'- -aGACCGGCGGGUGcc-GGCGAGGucGGa -3'
miRNA:   3'- ugCUGGCUGCUCGCuuuUCGUUCU--CC- -5'
10982 5' -51 NC_002794.1 + 66255 0.67 0.992408
Target:  5'- gGCGACCcguccggccccguaGACGAGCgGAGGGGUccGAGc -3'
miRNA:   3'- -UGCUGG--------------CUGCUCG-CUUUUCGuuCUCc -5'
10982 5' -51 NC_002794.1 + 66506 0.69 0.980409
Target:  5'- cUGAUCGGCGAGCGAuAGGCcguccccGGGu -3'
miRNA:   3'- uGCUGGCUGCUCGCUuUUCGuuc----UCC- -5'
10982 5' -51 NC_002794.1 + 66749 0.67 0.993667
Target:  5'- gGCGGCgCGuACGAccGCuGGAccAGCGAGAGGa -3'
miRNA:   3'- -UGCUG-GC-UGCU--CGcUUU--UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 66959 0.67 0.994516
Target:  5'- -aGGCCGGCGAGuCGcuc-GCcGGGGGa -3'
miRNA:   3'- ugCUGGCUGCUC-GCuuuuCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 69590 0.69 0.974953
Target:  5'- cGCGuCgGACGAGCGGGAGGCcgccuccacgaccaAcgcgaGGAGGa -3'
miRNA:   3'- -UGCuGgCUGCUCGCUUUUCG--------------U-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 69746 0.7 0.973092
Target:  5'- cACGGCCGGCGAcgccGCGggGauGGCGAcGAa- -3'
miRNA:   3'- -UGCUGGCUGCU----CGCuuU--UCGUU-CUcc -5'
10982 5' -51 NC_002794.1 + 70273 0.67 0.995939
Target:  5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3'
miRNA:   3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5'
10982 5' -51 NC_002794.1 + 71790 0.66 0.997496
Target:  5'- gGCGAgucgccccCCGGCGGGCGc--GGCGAGGc- -3'
miRNA:   3'- -UGCU--------GGCUGCUCGCuuuUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 72750 0.71 0.948739
Target:  5'- gGCGGCCGccgacCGAGCGGAucuuaaauAGCGAGAa- -3'
miRNA:   3'- -UGCUGGCu----GCUCGCUUu-------UCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 75060 0.66 0.997044
Target:  5'- cGCGACCGACG-GCGuc-GGCAc---- -3'
miRNA:   3'- -UGCUGGCUGCuCGCuuuUCGUucucc -5'
10982 5' -51 NC_002794.1 + 76677 0.67 0.994436
Target:  5'- cACG-CCGACGgcgcaGGCGAacaccgcAAAGUuuAAGAGGa -3'
miRNA:   3'- -UGCuGGCUGC-----UCGCU-------UUUCG--UUCUCC- -5'
10982 5' -51 NC_002794.1 + 78327 0.69 0.978158
Target:  5'- cCGGCgCGACGGGCGGAGGcGCcGGAa- -3'
miRNA:   3'- uGCUG-GCUGCUCGCUUUU-CGuUCUcc -5'
10982 5' -51 NC_002794.1 + 79978 0.68 0.987718
Target:  5'- cCGGCuCGGCGA-CGAgGAGGCGgaGGAGGa -3'
miRNA:   3'- uGCUG-GCUGCUcGCU-UUUCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 84017 0.67 0.995939
Target:  5'- cACGACgGgcACGAGCGAc--GCGAGcGGc -3'
miRNA:   3'- -UGCUGgC--UGCUCGCUuuuCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 84736 0.69 0.984386
Target:  5'- cCGACCGACGGcaacgccaCGAccgGccGCGAGAGGg -3'
miRNA:   3'- uGCUGGCUGCUc-------GCU---UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 86744 0.7 0.956814
Target:  5'- cCGACCgcGACGAGCGAAGccGGguGGAu- -3'
miRNA:   3'- uGCUGG--CUGCUCGCUUU--UCguUCUcc -5'
10982 5' -51 NC_002794.1 + 87088 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.