miRNA display CGI


Results 61 - 80 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 87130 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87172 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87214 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 87256 0.68 0.990471
Target:  5'- -aGGCCgGGCGGGUGggGGuGCAGGccGGGc -3'
miRNA:   3'- ugCUGG-CUGCUCGCuuUU-CGUUC--UCC- -5'
10982 5' -51 NC_002794.1 + 91216 0.67 0.993667
Target:  5'- gGCGACgCGACG-GCGGAcGGCGcGGcGGc -3'
miRNA:   3'- -UGCUG-GCUGCuCGCUUuUCGUuCU-CC- -5'
10982 5' -51 NC_002794.1 + 91275 0.66 0.997659
Target:  5'- -gGACCGGCGcggccuguacgugucGGCGcuGAGCGAGGc- -3'
miRNA:   3'- ugCUGGCUGC---------------UCGCuuUUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 91754 0.69 0.982482
Target:  5'- --uGCCGGCGGGCGGcaccgcGCAGGAcGGg -3'
miRNA:   3'- ugcUGGCUGCUCGCUuuu---CGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 92267 0.66 0.997496
Target:  5'- gGCGGCggCGcCGGGCGAGGcgcgcaaggucGGCGAcGAGGc -3'
miRNA:   3'- -UGCUG--GCuGCUCGCUUU-----------UCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 93853 0.69 0.980409
Target:  5'- gACGGCCGcgGCG-GCGAGccgcccGAGUAcGAGGa -3'
miRNA:   3'- -UGCUGGC--UGCuCGCUU------UUCGUuCUCC- -5'
10982 5' -51 NC_002794.1 + 94048 0.72 0.924385
Target:  5'- aGCGG-CGGCGGuGCGggGgcGGCGGGGGGc -3'
miRNA:   3'- -UGCUgGCUGCU-CGCuuU--UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 94144 0.66 0.997044
Target:  5'- cCGACCGcgGCGGcGCuGGAcGGUggGGGGg -3'
miRNA:   3'- uGCUGGC--UGCU-CG-CUUuUCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 94215 0.66 0.996528
Target:  5'- gUGACgGugGcGGCGAcgGGCGGGcGGg -3'
miRNA:   3'- uGCUGgCugC-UCGCUuuUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 94279 0.7 0.973092
Target:  5'- cGCGGCgCGGCccGAGCGggGGGCGGcucGGGc -3'
miRNA:   3'- -UGCUG-GCUG--CUCGCuuUUCGUUc--UCC- -5'
10982 5' -51 NC_002794.1 + 95781 0.8 0.578862
Target:  5'- gGCGGCCG--GGGCGAGAGGCGcggcGGAGGa -3'
miRNA:   3'- -UGCUGGCugCUCGCUUUUCGU----UCUCC- -5'
10982 5' -51 NC_002794.1 + 95825 0.68 0.991653
Target:  5'- gGCGGCCgGGgGAGCGGcggcGGCGgccggGGAGGc -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUuu--UCGU-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 95883 0.74 0.841024
Target:  5'- gGCGAcCCGGCG-GCGAGGGcgcacgacgugguGCGGGAGGu -3'
miRNA:   3'- -UGCU-GGCUGCuCGCUUUU-------------CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 96543 0.72 0.923836
Target:  5'- cGCG-CCGACGAaccggucGaCGAGGAGCGGGAGcGg -3'
miRNA:   3'- -UGCuGGCUGCU-------C-GCUUUUCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 96760 0.71 0.94435
Target:  5'- aGCGGCCGGCGGuCGAGucGCccGGGGu -3'
miRNA:   3'- -UGCUGGCUGCUcGCUUuuCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 98351 0.72 0.929215
Target:  5'- uACGACCGGcCGAucgccgcGCGGcuGGCGGGAGa -3'
miRNA:   3'- -UGCUGGCU-GCU-------CGCUuuUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 98461 0.68 0.986128
Target:  5'- gACGAgcgUCGACGGGacgGAAGAGCAGGGc- -3'
miRNA:   3'- -UGCU---GGCUGCUCg--CUUUUCGUUCUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.