miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 99351 0.7 0.967225
Target:  5'- gGCGAUCcgucgguugGACGAa-GAGAAGCGGGAGGu -3'
miRNA:   3'- -UGCUGG---------CUGCUcgCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 99563 0.69 0.980409
Target:  5'- cGCGcccuCCG-CGGGCGAGGGGgGugcGGAGGg -3'
miRNA:   3'- -UGCu---GGCuGCUCGCUUUUCgU---UCUCC- -5'
10982 5' -51 NC_002794.1 + 100349 0.67 0.995939
Target:  5'- uCGACCGcCGAGCuGGAGGUGGacugcGAGGu -3'
miRNA:   3'- uGCUGGCuGCUCGcUUUUCGUU-----CUCC- -5'
10982 5' -51 NC_002794.1 + 101496 0.68 0.990471
Target:  5'- gGCGGCCGGucCGAGCGGugcGGCAcacgccGGcGGGg -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUuu-UCGU------UC-UCC- -5'
10982 5' -51 NC_002794.1 + 101589 0.67 0.994516
Target:  5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 103577 0.68 0.989163
Target:  5'- gUGGCCGACGAgcaGCGGucGGGCAGGcAGcGg -3'
miRNA:   3'- uGCUGGCUGCU---CGCUu-UUCGUUC-UC-C- -5'
10982 5' -51 NC_002794.1 + 103663 0.69 0.984386
Target:  5'- gGCGuGCCGguGCGAGUGGAAguggaagggcAGCGAGAuGGc -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUUU----------UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 103876 0.71 0.948739
Target:  5'- aGCGACgagagCGACGAgaGCGAcGAGCAGcGGGGc -3'
miRNA:   3'- -UGCUG-----GCUGCU--CGCUuUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 104497 0.76 0.751702
Target:  5'- gGCGGCCGGguCGGGCGAGAacgGGCu-GAGGc -3'
miRNA:   3'- -UGCUGGCU--GCUCGCUUU---UCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 104709 0.67 0.993667
Target:  5'- -aGACCGGCGuGCacGAGAGguAGAuGGg -3'
miRNA:   3'- ugCUGGCUGCuCGc-UUUUCguUCU-CC- -5'
10982 5' -51 NC_002794.1 + 105550 0.67 0.994436
Target:  5'- gGCGGCUcgGGCGAacggauagggugcGCGuAGAGCAGGAGc -3'
miRNA:   3'- -UGCUGG--CUGCU-------------CGCuUUUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 105821 0.76 0.741948
Target:  5'- cGCGACCGggucggucgaGCGAGCGGGAc-CGAGGGGa -3'
miRNA:   3'- -UGCUGGC----------UGCUCGCUUUucGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 105873 0.71 0.952893
Target:  5'- gGCG-CCGAgGAcGUGggGGGUggGAGAGGa -3'
miRNA:   3'- -UGCuGGCUgCU-CGCuuUUCG--UUCUCC- -5'
10982 5' -51 NC_002794.1 + 106256 0.66 0.996996
Target:  5'- cGCGaACCGGCGAGCGccgcgcgucGcgccgccucggacGGCGAGAGa -3'
miRNA:   3'- -UGC-UGGCUGCUCGCuu-------U-------------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 106356 0.7 0.973092
Target:  5'- gACGGCgGGCGGGCGccgguucGCGcGGAGGg -3'
miRNA:   3'- -UGCUGgCUGCUCGCuuuu---CGU-UCUCC- -5'
10982 5' -51 NC_002794.1 + 107216 0.66 0.997888
Target:  5'- gGCG-CCGcCGGGCGgcGcGCGAcGGGGg -3'
miRNA:   3'- -UGCuGGCuGCUCGCuuUuCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 107553 0.74 0.833567
Target:  5'- gACGACCGcggUGGGgGAGGAGgAGGAGGc -3'
miRNA:   3'- -UGCUGGCu--GCUCgCUUUUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 107943 0.68 0.989163
Target:  5'- aGCGGCUGGCucgcuacccGcGCGAGAAGCuGGAGa -3'
miRNA:   3'- -UGCUGGCUG---------CuCGCUUUUCGuUCUCc -5'
10982 5' -51 NC_002794.1 + 108335 0.74 0.841843
Target:  5'- gGCGGCgcaggaggaggUGGCgGAGCGggGAGCGgaGGAGGa -3'
miRNA:   3'- -UGCUG-----------GCUG-CUCGCuuUUCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 108374 0.72 0.906867
Target:  5'- -nGACCGGgcgccgGAGCGggGAGC-GGAGGc -3'
miRNA:   3'- ugCUGGCUg-----CUCGCuuUUCGuUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.