miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 192961 0.71 0.952893
Target:  5'- -aGGCCGACGAGCcgu--GCAGGAccaGGg -3'
miRNA:   3'- ugCUGGCUGCUCGcuuuuCGUUCU---CC- -5'
10982 5' -51 NC_002794.1 + 191912 0.72 0.92974
Target:  5'- -gGACCGGCugaaucGGCGAAGA-CGAGAGGa -3'
miRNA:   3'- ugCUGGCUGc-----UCGCUUUUcGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 191870 0.75 0.825105
Target:  5'- -aGGCCGGCG-GCGGAGggGGCGgcGGAGGc -3'
miRNA:   3'- ugCUGGCUGCuCGCUUU--UCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 191278 0.66 0.998227
Target:  5'- cCGAcCCGGCGAGacaccacaccacCGAGAcacggauGCGAGGGGc -3'
miRNA:   3'- uGCU-GGCUGCUC------------GCUUUu------CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 188246 0.67 0.992715
Target:  5'- uCGACCGGCGgcGGCGGcgguAGCGGcGGGc -3'
miRNA:   3'- uGCUGGCUGC--UCGCUuu--UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 187796 0.7 0.967225
Target:  5'- aACGGCCcGCGaAGCGAGcGAGCGAGuGa -3'
miRNA:   3'- -UGCUGGcUGC-UCGCUU-UUCGUUCuCc -5'
10982 5' -51 NC_002794.1 + 187589 0.66 0.997659
Target:  5'- cGCGGCCGcCGucGCGAcgcccggcgucgcccAGAGCcgcugGAGAGGc -3'
miRNA:   3'- -UGCUGGCuGCu-CGCU---------------UUUCG-----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 185625 0.71 0.939721
Target:  5'- aGCGA-CGGCGAGCGAGAcuCGAGcGGc -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUUucGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 185467 0.7 0.960507
Target:  5'- aACG-CCG-CGGGCGGcggccgcGGCGAGGGGa -3'
miRNA:   3'- -UGCuGGCuGCUCGCUuu-----UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 185351 0.67 0.995939
Target:  5'- cGCGcGCCGccGCGAGCGGGccgaacgccgcGAGCGAGGc- -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUU-----------UUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 182336 0.74 0.857808
Target:  5'- -gGGCgGGCGAGCGGAcGGGCGGGcGGg -3'
miRNA:   3'- ugCUGgCUGCUCGCUU-UUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 182305 0.66 0.997888
Target:  5'- gACGGgCaGACGGGCGGAcGGGCGGucGGg -3'
miRNA:   3'- -UGCUgG-CUGCUCGCUU-UUCGUUcuCC- -5'
10982 5' -51 NC_002794.1 + 182263 0.68 0.991653
Target:  5'- aGCGcGCCGAguccCGAGCGGccucccaugacGGGGCGGGuGGa -3'
miRNA:   3'- -UGC-UGGCU----GCUCGCU-----------UUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 181431 0.69 0.984386
Target:  5'- cGCGaaGCCGuCG-GCGAGGGGCcgcccGGAGGa -3'
miRNA:   3'- -UGC--UGGCuGCuCGCUUUUCGu----UCUCC- -5'
10982 5' -51 NC_002794.1 + 180954 0.66 0.997851
Target:  5'- cGCGGCCGACGcggacuccgucggGGCGAAcaacucCGAGAcGGa -3'
miRNA:   3'- -UGCUGGCUGC-------------UCGCUUuuc---GUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 180696 0.7 0.960507
Target:  5'- gGCGcCCGGCGGGCGGAccauGGCucGGGu -3'
miRNA:   3'- -UGCuGGCUGCUCGCUUu---UCGuuCUCc -5'
10982 5' -51 NC_002794.1 + 180408 0.69 0.974953
Target:  5'- -gGACCGACGucGCGuuGAAGCGggccaucucgacacGGAGGc -3'
miRNA:   3'- ugCUGGCUGCu-CGCu-UUUCGU--------------UCUCC- -5'
10982 5' -51 NC_002794.1 + 179950 0.75 0.789554
Target:  5'- -gGGCCGGgGAGCGAGcgacAGCAGGAGcGg -3'
miRNA:   3'- ugCUGGCUgCUCGCUUu---UCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 178270 0.69 0.984203
Target:  5'- cUGACCGGagacggggucgguCGAGCGAcggcucGAcGCGGGAGGc -3'
miRNA:   3'- uGCUGGCU-------------GCUCGCU------UUuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 178043 0.78 0.661196
Target:  5'- cCGGCUGACGGGUGGAgacuggaaGAGCGAGGGa -3'
miRNA:   3'- uGCUGGCUGCUCGCUU--------UUCGUUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.