miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 176939 0.67 0.995939
Target:  5'- gUGGCCGcUGAGUGAAAcgggGGCAGcGGGa -3'
miRNA:   3'- uGCUGGCuGCUCGCUUU----UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 159896 0.66 0.997888
Target:  5'- -aGGgCGGgGuAGCGAAGGGUAGGuGGg -3'
miRNA:   3'- ugCUgGCUgC-UCGCUUUUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 159287 0.69 0.978158
Target:  5'- uCGACCGACGAGgGcgGAGguGGcAGc -3'
miRNA:   3'- uGCUGGCUGCUCgCuuUUCguUC-UCc -5'
10982 5' -51 NC_002794.1 + 158153 0.66 0.997776
Target:  5'- gGCGACgaggggaagguccaCGGUGAGCGGAAccgcgaugGGUGAGGGGg -3'
miRNA:   3'- -UGCUG--------------GCUGCUCGCUUU--------UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 158099 0.7 0.967225
Target:  5'- -gGAUCGugGGGCGGucgcgccguAGCGGGAGa -3'
miRNA:   3'- ugCUGGCugCUCGCUuu-------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 156424 0.71 0.932836
Target:  5'- cACGGCCGGCGGGUGAgaGAccggucgcgccgaaGGCGguugguuAGGGGg -3'
miRNA:   3'- -UGCUGGCUGCUCGCU--UU--------------UCGU-------UCUCC- -5'
10982 5' -51 NC_002794.1 + 153693 0.66 0.997888
Target:  5'- cGCGACCGGCGAcCGGuuuAGCGAc--- -3'
miRNA:   3'- -UGCUGGCUGCUcGCUuu-UCGUUcucc -5'
10982 5' -51 NC_002794.1 + 152533 0.7 0.963975
Target:  5'- uACGACCGccuguGCGAcuGCGAAGAGUgccAGGAGcGg -3'
miRNA:   3'- -UGCUGGC-----UGCU--CGCUUUUCG---UUCUC-C- -5'
10982 5' -51 NC_002794.1 + 149449 0.7 0.967225
Target:  5'- uCGAUCucggggaagggGGCGGuCGAGGAGCGAGGGGg -3'
miRNA:   3'- uGCUGG-----------CUGCUcGCUUUUCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 148083 0.67 0.993667
Target:  5'- gUGGCCu-CGAGCGAGGAGCAGc--- -3'
miRNA:   3'- uGCUGGcuGCUCGCUUUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 146743 0.67 0.992715
Target:  5'- gACGACgGGCc-GCGGAucGgGGGAGGg -3'
miRNA:   3'- -UGCUGgCUGcuCGCUUuuCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 146595 0.72 0.924385
Target:  5'- gACGaaGCUGuCGAGCGAcgAAGGCGGcGAGGa -3'
miRNA:   3'- -UGC--UGGCuGCUCGCU--UUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 145916 0.76 0.780284
Target:  5'- uCGACCGcgcCGAGCGGAGgggccGGCGAGAGcGg -3'
miRNA:   3'- uGCUGGCu--GCUCGCUUU-----UCGUUCUC-C- -5'
10982 5' -51 NC_002794.1 + 145876 0.75 0.816464
Target:  5'- cGCGACCGGaccGCGAGAAGCGgcgagcgcgacGGGGGa -3'
miRNA:   3'- -UGCUGGCUgcuCGCUUUUCGU-----------UCUCC- -5'
10982 5' -51 NC_002794.1 + 145592 0.69 0.984386
Target:  5'- gGCGGCCGGCucccGCGGAGucgggcGCGAcGAGGa -3'
miRNA:   3'- -UGCUGGCUGcu--CGCUUUu-----CGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 145324 0.66 0.996472
Target:  5'- cGCGGCgGGCggcgcucgggcccGAGCGGGcccGAGCuGGGGGu -3'
miRNA:   3'- -UGCUGgCUG-------------CUCGCUU---UUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 143356 0.66 0.998227
Target:  5'- gGCGAUagggGAUcaGGGUGAGGGGCAgauaggAGAGGg -3'
miRNA:   3'- -UGCUGg---CUG--CUCGCUUUUCGU------UCUCC- -5'
10982 5' -51 NC_002794.1 + 142350 0.68 0.991653
Target:  5'- gGCGGCgGAgGcGGCGGAGgcGGCGgaggcGGAGGg -3'
miRNA:   3'- -UGCUGgCUgC-UCGCUUU--UCGU-----UCUCC- -5'
10982 5' -51 NC_002794.1 + 142215 0.77 0.691904
Target:  5'- gGCGGCagCGGCGGuGCGggGAGCGgcGGAGGc -3'
miRNA:   3'- -UGCUG--GCUGCU-CGCuuUUCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 141828 0.69 0.978158
Target:  5'- gACGA-CGACGAGCGGAucGCucGGcGGu -3'
miRNA:   3'- -UGCUgGCUGCUCGCUUuuCGuuCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.