miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 141657 0.69 0.984386
Target:  5'- cGCGGCCGcCG-GCGGGucGAGCgAAGAcGGg -3'
miRNA:   3'- -UGCUGGCuGCuCGCUU--UUCG-UUCU-CC- -5'
10982 5' -51 NC_002794.1 + 141615 0.73 0.887203
Target:  5'- gGCGACCGGCucGCGGucuAGCGAcGGGa -3'
miRNA:   3'- -UGCUGGCUGcuCGCUuu-UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 141329 0.7 0.967225
Target:  5'- uCGGCUcgguGGCGAGCGAAGA-CGAGAGc -3'
miRNA:   3'- uGCUGG----CUGCUCGCUUUUcGUUCUCc -5'
10982 5' -51 NC_002794.1 + 140189 0.68 0.987718
Target:  5'- gGCGACggcgucguCGAgGGGCGAcccGGGCcGGAGGa -3'
miRNA:   3'- -UGCUG--------GCUgCUCGCUu--UUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 140110 0.73 0.880185
Target:  5'- gGCGAUCGACG-GCGGucgacgguGGGCGGGuGGg -3'
miRNA:   3'- -UGCUGGCUGCuCGCUu-------UUCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 140028 0.66 0.996528
Target:  5'- cGCGGCCcccGCGGGCGGcgGGAGacacggaAAGGGGc -3'
miRNA:   3'- -UGCUGGc--UGCUCGCU--UUUCg------UUCUCC- -5'
10982 5' -51 NC_002794.1 + 139822 0.67 0.992715
Target:  5'- -gGACCugGACGA-CGAAGAcCAAGAGGu -3'
miRNA:   3'- ugCUGG--CUGCUcGCUUUUcGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 137930 0.67 0.992715
Target:  5'- cGCGGUCGAUGAGCuGGAGGCAgcGGcGGa -3'
miRNA:   3'- -UGCUGGCUGCUCGcUUUUCGU--UCuCC- -5'
10982 5' -51 NC_002794.1 + 137744 0.72 0.924385
Target:  5'- -gGGCCGACGcuuggaacggcGGCucGAAGAGCAGGAuGGg -3'
miRNA:   3'- ugCUGGCUGC-----------UCG--CUUUUCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 136117 0.67 0.994516
Target:  5'- uGC-ACCuGGCGGGCGAagucGAAG-AGGAGGg -3'
miRNA:   3'- -UGcUGG-CUGCUCGCU----UUUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 135634 0.72 0.92974
Target:  5'- gACG-UCGGCGAacaacagcGCGGAGGGUggGGGGg -3'
miRNA:   3'- -UGCuGGCUGCU--------CGCUUUUCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 134129 0.69 0.975721
Target:  5'- gACGGCgCGGCGAGCGcGGAAGCucGGu- -3'
miRNA:   3'- -UGCUG-GCUGCUCGC-UUUUCGuuCUcc -5'
10982 5' -51 NC_002794.1 + 131708 0.73 0.887203
Target:  5'- cCGACCGgaccccgagaGCGAGCGAGcGGGCGAGAu- -3'
miRNA:   3'- uGCUGGC----------UGCUCGCUU-UUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 130220 0.86 0.304061
Target:  5'- gGCGACCGACGGGCuccuGAGAGGCcucgAGGAGGu -3'
miRNA:   3'- -UGCUGGCUGCUCG----CUUUUCG----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 129210 0.7 0.960507
Target:  5'- aGCGGCCGACG-GCGGuggauAGGCGcGAacGGg -3'
miRNA:   3'- -UGCUGGCUGCuCGCUu----UUCGUuCU--CC- -5'
10982 5' -51 NC_002794.1 + 129075 0.67 0.994516
Target:  5'- cGCGGCUGGCG-GCGGAccguccGGUggGuGGa -3'
miRNA:   3'- -UGCUGGCUGCuCGCUUu-----UCGuuCuCC- -5'
10982 5' -51 NC_002794.1 + 128089 0.66 0.997888
Target:  5'- cCGAgUCGGCGA-CGggGAGCucgacGGGGGg -3'
miRNA:   3'- uGCU-GGCUGCUcGCuuUUCGu----UCUCC- -5'
10982 5' -51 NC_002794.1 + 127638 0.66 0.996528
Target:  5'- gACG-CCGACGAcCGAGAcccGaCGGGGGGg -3'
miRNA:   3'- -UGCuGGCUGCUcGCUUUu--C-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 126663 0.73 0.880185
Target:  5'- -aGACCGACGGGCcgc-GGCGAGGGc -3'
miRNA:   3'- ugCUGGCUGCUCGcuuuUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 125709 0.72 0.912947
Target:  5'- gUGACgGugGAGCGGAGcgaacGGgAGGAGGc -3'
miRNA:   3'- uGCUGgCugCUCGCUUU-----UCgUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.