miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 123699 0.7 0.963975
Target:  5'- cGCGACUGGCGGGCGu-GAGCGc---- -3'
miRNA:   3'- -UGCUGGCUGCUCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 122490 0.67 0.993667
Target:  5'- -gGGCUGaACGAGuCGGcgccGCAGGAGGg -3'
miRNA:   3'- ugCUGGC-UGCUC-GCUuuu-CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 121802 0.66 0.996946
Target:  5'- cGCGACCGGCcGGCGccugccgcuGCAGGAu- -3'
miRNA:   3'- -UGCUGGCUGcUCGCuuuu-----CGUUCUcc -5'
10982 5' -51 NC_002794.1 + 121731 0.7 0.960507
Target:  5'- gACGACgaCGACGAGCacggcGGCGAGAcGGa -3'
miRNA:   3'- -UGCUG--GCUGCUCGcuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 119299 0.69 0.984386
Target:  5'- -aGGCCagGGCGAGCuGAcAGAGCucguGGAGGa -3'
miRNA:   3'- ugCUGG--CUGCUCG-CU-UUUCGu---UCUCC- -5'
10982 5' -51 NC_002794.1 + 118988 0.69 0.984386
Target:  5'- cACGuCCGG-GcGCGggGAGaCGAGGGGg -3'
miRNA:   3'- -UGCuGGCUgCuCGCuuUUC-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 118326 0.71 0.948739
Target:  5'- cGCGACgGGCG-GCGAgaAGAGCAGGucGc -3'
miRNA:   3'- -UGCUGgCUGCuCGCU--UUUCGUUCucC- -5'
10982 5' -51 NC_002794.1 + 117302 0.66 0.996528
Target:  5'- uGCGGCgUGuCGAGCGAcuggAAGGUGGcGAGGa -3'
miRNA:   3'- -UGCUG-GCuGCUCGCU----UUUCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 116036 0.7 0.963975
Target:  5'- -gGACCGGaGAG-GAGAGcGCAGGGGGg -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUU-CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 115964 0.7 0.960507
Target:  5'- -gGACCGugGGGgGG--AGCGGGAcGGg -3'
miRNA:   3'- ugCUGGCugCUCgCUuuUCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 115881 0.68 0.990471
Target:  5'- gGCGuCCGggGCGuccGCGGAgcGCGGGGGGu -3'
miRNA:   3'- -UGCuGGC--UGCu--CGCUUuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 115836 0.66 0.997044
Target:  5'- gGCGGggcCCGGCGGGCucgggccuGGGAcgcGCGAGGGGu -3'
miRNA:   3'- -UGCU---GGCUGCUCG--------CUUUu--CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 114563 0.66 0.996528
Target:  5'- uCGGCCaGGCGcAGCGuc-AGC-GGAGGg -3'
miRNA:   3'- uGCUGG-CUGC-UCGCuuuUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 112500 0.71 0.948739
Target:  5'- cACGuACCG-CGAGCGGucgcggugcuGgcGCAGGAGGu -3'
miRNA:   3'- -UGC-UGGCuGCUCGCU----------UuuCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 112342 0.69 0.977923
Target:  5'- cCGGCCGGCGgcgccggcggcggGGCGggGAGCugcuGGa -3'
miRNA:   3'- uGCUGGCUGC-------------UCGCuuUUCGuucuCC- -5'
10982 5' -51 NC_002794.1 + 112320 0.68 0.989163
Target:  5'- gGCG-CCGACG-GCGggGAGCGc---- -3'
miRNA:   3'- -UGCuGGCUGCuCGCuuUUCGUucucc -5'
10982 5' -51 NC_002794.1 + 112111 0.69 0.982482
Target:  5'- cGCGGCCggGACGAcggcGCGggGAGguAGAucGGc -3'
miRNA:   3'- -UGCUGG--CUGCU----CGCuuUUCguUCU--CC- -5'
10982 5' -51 NC_002794.1 + 110455 0.72 0.904996
Target:  5'- -aGGCCGGCGAGCcggcucgucggcucGggGGGUAgAGAGGc -3'
miRNA:   3'- ugCUGGCUGCUCG--------------CuuUUCGU-UCUCC- -5'
10982 5' -51 NC_002794.1 + 109165 0.7 0.973092
Target:  5'- gAUGG-CGACGAGCGGcgguAGCGgcGGAGGc -3'
miRNA:   3'- -UGCUgGCUGCUCGCUuu--UCGU--UCUCC- -5'
10982 5' -51 NC_002794.1 + 109140 0.79 0.619956
Target:  5'- -gGACCGAgGAGgGGGAGGCGGGGGa -3'
miRNA:   3'- ugCUGGCUgCUCgCUUUUCGUUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.