miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 55305 0.66 0.998227
Target:  5'- gGCGGCgucgCGGCGGGCGc-GGGCGGcuuccGAGGa -3'
miRNA:   3'- -UGCUG----GCUGCUCGCuuUUCGUU-----CUCC- -5'
10982 5' -51 NC_002794.1 + 47789 0.66 0.998227
Target:  5'- aGCGGCCGcaguacACGgucucGGCGAAcAGGCGGacGAGGg -3'
miRNA:   3'- -UGCUGGC------UGC-----UCGCUU-UUCGUU--CUCC- -5'
10982 5' -51 NC_002794.1 + 42573 0.66 0.998227
Target:  5'- cGCGGCgGACccGCGGAcGG-AGGAGGg -3'
miRNA:   3'- -UGCUGgCUGcuCGCUUuUCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 191278 0.66 0.998227
Target:  5'- cCGAcCCGGCGAGacaccacaccacCGAGAcacggauGCGAGGGGc -3'
miRNA:   3'- uGCU-GGCUGCUC------------GCUUUu------CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 64803 0.66 0.998227
Target:  5'- gGCGAgCGACGccGCGGAcGGCGGcGAGc -3'
miRNA:   3'- -UGCUgGCUGCu-CGCUUuUCGUU-CUCc -5'
10982 5' -51 NC_002794.1 + 158153 0.66 0.997776
Target:  5'- gGCGACgaggggaagguccaCGGUGAGCGGAAccgcgaugGGUGAGGGGg -3'
miRNA:   3'- -UGCUG--------------GCUGCUCGCUUU--------UCGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 187589 0.66 0.997659
Target:  5'- cGCGGCCGcCGucGCGAcgcccggcgucgcccAGAGCcgcugGAGAGGc -3'
miRNA:   3'- -UGCUGGCuGCu-CGCU---------------UUUCG-----UUCUCC- -5'
10982 5' -51 NC_002794.1 + 127638 0.66 0.996528
Target:  5'- gACG-CCGACGAcCGAGAcccGaCGGGGGGg -3'
miRNA:   3'- -UGCuGGCUGCUcGCUUUu--C-GUUCUCC- -5'
10982 5' -51 NC_002794.1 + 18516 0.66 0.996528
Target:  5'- cGCGACCG-CGAacgcggccGCGAAcgcGAGCAcGAGc -3'
miRNA:   3'- -UGCUGGCuGCU--------CGCUU---UUCGUuCUCc -5'
10982 5' -51 NC_002794.1 + 3742 0.66 0.996528
Target:  5'- cGCGACCGcaACGcGCGucacGGCGGGGcGGg -3'
miRNA:   3'- -UGCUGGC--UGCuCGCuuu-UCGUUCU-CC- -5'
10982 5' -51 NC_002794.1 + 140028 0.66 0.996528
Target:  5'- cGCGGCCcccGCGGGCGGcgGGAGacacggaAAGGGGc -3'
miRNA:   3'- -UGCUGGc--UGCUCGCU--UUUCg------UUCUCC- -5'
10982 5' -51 NC_002794.1 + 121802 0.66 0.996946
Target:  5'- cGCGACCGGCcGGCGccugccgcuGCAGGAu- -3'
miRNA:   3'- -UGCUGGCUGcUCGCuuuu-----CGUUCUcc -5'
10982 5' -51 NC_002794.1 + 106256 0.66 0.996996
Target:  5'- cGCGaACCGGCGAGCGccgcgcgucGcgccgccucggacGGCGAGAGa -3'
miRNA:   3'- -UGC-UGGCUGCUCGCuu-------U-------------UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 94144 0.66 0.997044
Target:  5'- cCGACCGcgGCGGcGCuGGAcGGUggGGGGg -3'
miRNA:   3'- uGCUGGC--UGCU-CG-CUUuUCGuuCUCC- -5'
10982 5' -51 NC_002794.1 + 75060 0.66 0.997044
Target:  5'- cGCGACCGACG-GCGuc-GGCAc---- -3'
miRNA:   3'- -UGCUGGCUGCuCGCuuuUCGUucucc -5'
10982 5' -51 NC_002794.1 + 115836 0.66 0.997044
Target:  5'- gGCGGggcCCGGCGGGCucgggccuGGGAcgcGCGAGGGGu -3'
miRNA:   3'- -UGCU---GGCUGCUCG--------CUUUu--CGUUCUCC- -5'
10982 5' -51 NC_002794.1 + 71790 0.66 0.997496
Target:  5'- gGCGAgucgccccCCGGCGGGCGc--GGCGAGGc- -3'
miRNA:   3'- -UGCU--------GGCUGCUCGCuuuUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 92267 0.66 0.997496
Target:  5'- gGCGGCggCGcCGGGCGAGGcgcgcaaggucGGCGAcGAGGc -3'
miRNA:   3'- -UGCUG--GCuGCUCGCUUU-----------UCGUU-CUCC- -5'
10982 5' -51 NC_002794.1 + 91275 0.66 0.997659
Target:  5'- -gGACCGGCGcggccuguacgugucGGCGcuGAGCGAGGc- -3'
miRNA:   3'- ugCUGGCUGC---------------UCGCuuUUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 13314 0.66 0.997496
Target:  5'- cCGcCCGGCGAGCGAcGaccgcucccccGGUcGGGGGu -3'
miRNA:   3'- uGCuGGCUGCUCGCUuU-----------UCGuUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.