Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 129075 | 0.67 | 0.994516 |
Target: 5'- cGCGGCUGGCG-GCGGAccguccGGUggGuGGa -3' miRNA: 3'- -UGCUGGCUGCuCGCUUu-----UCGuuCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 56040 | 0.67 | 0.995271 |
Target: 5'- aGCGGCaGAaGAGCGu-GGGCAGGuGGa -3' miRNA: 3'- -UGCUGgCUgCUCGCuuUUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 108474 | 0.67 | 0.995271 |
Target: 5'- -gGGCCGAgGGGCGAccGGcCAAGAu- -3' miRNA: 3'- ugCUGGCUgCUCGCUuuUC-GUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 101589 | 0.67 | 0.994516 |
Target: 5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3' miRNA: 3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 66959 | 0.67 | 0.994516 |
Target: 5'- -aGGCCGGCGAGuCGcuc-GCcGGGGGa -3' miRNA: 3'- ugCUGGCUGCUC-GCuuuuCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 24819 | 0.67 | 0.994516 |
Target: 5'- cGCGACCGACGA-CGGGu--CAcGGGGa -3' miRNA: 3'- -UGCUGGCUGCUcGCUUuucGUuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 136117 | 0.67 | 0.994516 |
Target: 5'- uGC-ACCuGGCGGGCGAagucGAAG-AGGAGGg -3' miRNA: 3'- -UGcUGG-CUGCUCGCU----UUUCgUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 70273 | 0.67 | 0.995939 |
Target: 5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3' miRNA: 3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 47992 | 0.67 | 0.995939 |
Target: 5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3' miRNA: 3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 185351 | 0.67 | 0.995939 |
Target: 5'- cGCGcGCCGccGCGAGCGGGccgaacgccgcGAGCGAGGc- -3' miRNA: 3'- -UGC-UGGC--UGCUCGCUU-----------UUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 3742 | 0.66 | 0.996528 |
Target: 5'- cGCGACCGcaACGcGCGucacGGCGGGGcGGg -3' miRNA: 3'- -UGCUGGC--UGCuCGCuuu-UCGUUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 18516 | 0.66 | 0.996528 |
Target: 5'- cGCGACCG-CGAacgcggccGCGAAcgcGAGCAcGAGc -3' miRNA: 3'- -UGCUGGCuGCU--------CGCUU---UUCGUuCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 127638 | 0.66 | 0.996528 |
Target: 5'- gACG-CCGACGAcCGAGAcccGaCGGGGGGg -3' miRNA: 3'- -UGCuGGCUGCUcGCUUUu--C-GUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 117302 | 0.66 | 0.996528 |
Target: 5'- uGCGGCgUGuCGAGCGAcuggAAGGUGGcGAGGa -3' miRNA: 3'- -UGCUG-GCuGCUCGCU----UUUCGUU-CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 94215 | 0.66 | 0.996528 |
Target: 5'- gUGACgGugGcGGCGAcgGGCGGGcGGg -3' miRNA: 3'- uGCUGgCugC-UCGCUuuUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 114563 | 0.66 | 0.996528 |
Target: 5'- uCGGCCaGGCGcAGCGuc-AGC-GGAGGg -3' miRNA: 3'- uGCUGG-CUGC-UCGCuuuUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 44729 | 0.66 | 0.996528 |
Target: 5'- uCGGCCGGCGccgcCGGAGGGCuAAGAcGGc -3' miRNA: 3'- uGCUGGCUGCuc--GCUUUUCG-UUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 31737 | 0.66 | 0.996528 |
Target: 5'- -aGACCgGGCGGGCGAacGAAGCGGu--- -3' miRNA: 3'- ugCUGG-CUGCUCGCU--UUUCGUUcucc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 145324 | 0.66 | 0.996472 |
Target: 5'- cGCGGCgGGCggcgcucgggcccGAGCGGGcccGAGCuGGGGGu -3' miRNA: 3'- -UGCUGgCUG-------------CUCGCUU---UUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 14539 | 0.66 | 0.996359 |
Target: 5'- cACGGCgcucucgcccccguCGACGcGCGGGAGGCGAGccGGc -3' miRNA: 3'- -UGCUG--------------GCUGCuCGCUUUUCGUUCu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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