miRNA display CGI


Results 101 - 120 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10982 5' -51 NC_002794.1 + 104709 0.67 0.993667
Target:  5'- -aGACCGGCGuGCacGAGAGguAGAuGGg -3'
miRNA:   3'- ugCUGGCUGCuCGc-UUUUCguUCU-CC- -5'
10982 5' -51 NC_002794.1 + 53790 0.67 0.993667
Target:  5'- cGCGcCCGGCGgguuucucGGCGGGAgccucGGCGGGAGc -3'
miRNA:   3'- -UGCuGGCUGC--------UCGCUUU-----UCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 148083 0.67 0.993667
Target:  5'- gUGGCCu-CGAGCGAGGAGCAGc--- -3'
miRNA:   3'- uGCUGGcuGCUCGCUUUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 146743 0.67 0.992715
Target:  5'- gACGACgGGCc-GCGGAucGgGGGAGGg -3'
miRNA:   3'- -UGCUGgCUGcuCGCUUuuCgUUCUCC- -5'
10982 5' -51 NC_002794.1 + 137930 0.67 0.992715
Target:  5'- cGCGGUCGAUGAGCuGGAGGCAgcGGcGGa -3'
miRNA:   3'- -UGCUGGCUGCUCGcUUUUCGU--UCuCC- -5'
10982 5' -51 NC_002794.1 + 101589 0.67 0.994516
Target:  5'- cGCGGCCgGGgGGGCGGGugccggcccgccGGGCGGGGGu -3'
miRNA:   3'- -UGCUGG-CUgCUCGCUU------------UUCGUUCUCc -5'
10982 5' -51 NC_002794.1 + 108474 0.67 0.995271
Target:  5'- -gGGCCGAgGGGCGAccGGcCAAGAu- -3'
miRNA:   3'- ugCUGGCUgCUCGCUuuUC-GUUCUcc -5'
10982 5' -51 NC_002794.1 + 114563 0.66 0.996528
Target:  5'- uCGGCCaGGCGcAGCGuc-AGC-GGAGGg -3'
miRNA:   3'- uGCUGG-CUGC-UCGCuuuUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 44729 0.66 0.996528
Target:  5'- uCGGCCGGCGccgcCGGAGGGCuAAGAcGGc -3'
miRNA:   3'- uGCUGGCUGCuc--GCUUUUCG-UUCU-CC- -5'
10982 5' -51 NC_002794.1 + 31737 0.66 0.996528
Target:  5'- -aGACCgGGCGGGCGAacGAAGCGGu--- -3'
miRNA:   3'- ugCUGG-CUGCUCGCU--UUUCGUUcucc -5'
10982 5' -51 NC_002794.1 + 145324 0.66 0.996472
Target:  5'- cGCGGCgGGCggcgcucgggcccGAGCGGGcccGAGCuGGGGGu -3'
miRNA:   3'- -UGCUGgCUG-------------CUCGCUU---UUCGuUCUCC- -5'
10982 5' -51 NC_002794.1 + 14539 0.66 0.996359
Target:  5'- cACGGCgcucucgcccccguCGACGcGCGGGAGGCGAGccGGc -3'
miRNA:   3'- -UGCUG--------------GCUGCuCGCUUUUCGUUCu-CC- -5'
10982 5' -51 NC_002794.1 + 185351 0.67 0.995939
Target:  5'- cGCGcGCCGccGCGAGCGGGccgaacgccgcGAGCGAGGc- -3'
miRNA:   3'- -UGC-UGGC--UGCUCGCUU-----------UUCGUUCUcc -5'
10982 5' -51 NC_002794.1 + 47992 0.67 0.995939
Target:  5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3'
miRNA:   3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5'
10982 5' -51 NC_002794.1 + 70273 0.67 0.995939
Target:  5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3'
miRNA:   3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5'
10982 5' -51 NC_002794.1 + 84017 0.67 0.995939
Target:  5'- cACGACgGgcACGAGCGAc--GCGAGcGGc -3'
miRNA:   3'- -UGCUGgC--UGCUCGCUuuuCGUUCuCC- -5'
10982 5' -51 NC_002794.1 + 100349 0.67 0.995939
Target:  5'- uCGACCGcCGAGCuGGAGGUGGacugcGAGGu -3'
miRNA:   3'- uGCUGGCuGCUCGcUUUUCGUU-----CUCC- -5'
10982 5' -51 NC_002794.1 + 176939 0.67 0.995939
Target:  5'- gUGGCCGcUGAGUGAAAcgggGGCAGcGGGa -3'
miRNA:   3'- uGCUGGCuGCUCGCUUU----UCGUUcUCC- -5'
10982 5' -51 NC_002794.1 + 129075 0.67 0.994516
Target:  5'- cGCGGCUGGCG-GCGGAccguccGGUggGuGGa -3'
miRNA:   3'- -UGCUGGCUGCuCGCUUu-----UCGuuCuCC- -5'
10982 5' -51 NC_002794.1 + 56040 0.67 0.995271
Target:  5'- aGCGGCaGAaGAGCGu-GGGCAGGuGGa -3'
miRNA:   3'- -UGCUGgCUgCUCGCuuUUCGUUCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.