Results 61 - 80 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10982 | 5' | -51 | NC_002794.1 | + | 71790 | 0.66 | 0.997496 |
Target: 5'- gGCGAgucgccccCCGGCGGGCGc--GGCGAGGc- -3' miRNA: 3'- -UGCU--------GGCUGCUCGCuuuUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 115836 | 0.66 | 0.997044 |
Target: 5'- gGCGGggcCCGGCGGGCucgggccuGGGAcgcGCGAGGGGu -3' miRNA: 3'- -UGCU---GGCUGCUCG--------CUUUu--CGUUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 114563 | 0.66 | 0.996528 |
Target: 5'- uCGGCCaGGCGcAGCGuc-AGC-GGAGGg -3' miRNA: 3'- uGCUGG-CUGC-UCGCuuuUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 44729 | 0.66 | 0.996528 |
Target: 5'- uCGGCCGGCGccgcCGGAGGGCuAAGAcGGc -3' miRNA: 3'- uGCUGGCUGCuc--GCUUUUCG-UUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 31737 | 0.66 | 0.996528 |
Target: 5'- -aGACCgGGCGGGCGAacGAAGCGGu--- -3' miRNA: 3'- ugCUGG-CUGCUCGCU--UUUCGUUcucc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 145324 | 0.66 | 0.996472 |
Target: 5'- cGCGGCgGGCggcgcucgggcccGAGCGGGcccGAGCuGGGGGu -3' miRNA: 3'- -UGCUGgCUG-------------CUCGCUU---UUCGuUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 14539 | 0.66 | 0.996359 |
Target: 5'- cACGGCgcucucgcccccguCGACGcGCGGGAGGCGAGccGGc -3' miRNA: 3'- -UGCUG--------------GCUGCuCGCUUUUCGUUCu-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 185351 | 0.67 | 0.995939 |
Target: 5'- cGCGcGCCGccGCGAGCGGGccgaacgccgcGAGCGAGGc- -3' miRNA: 3'- -UGC-UGGC--UGCUCGCUU-----------UUCGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 47992 | 0.67 | 0.995939 |
Target: 5'- cCGAcCCGACGAGCGu---GCA-GuGGu -3' miRNA: 3'- uGCU-GGCUGCUCGCuuuuCGUuCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 70273 | 0.67 | 0.995939 |
Target: 5'- -aGGCCG-CGAagGcCGGAGAGCAggccGGGGGg -3' miRNA: 3'- ugCUGGCuGCU--C-GCUUUUCGU----UCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 94215 | 0.66 | 0.996528 |
Target: 5'- gUGACgGugGcGGCGAcgGGCGGGcGGg -3' miRNA: 3'- uGCUGgCugC-UCGCUuuUCGUUCuCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 117302 | 0.66 | 0.996528 |
Target: 5'- uGCGGCgUGuCGAGCGAcuggAAGGUGGcGAGGa -3' miRNA: 3'- -UGCUG-GCuGCUCGCU----UUUCGUU-CUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 75060 | 0.66 | 0.997044 |
Target: 5'- cGCGACCGACG-GCGuc-GGCAc---- -3' miRNA: 3'- -UGCUGGCUGCuCGCuuuUCGUucucc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 94144 | 0.66 | 0.997044 |
Target: 5'- cCGACCGcgGCGGcGCuGGAcGGUggGGGGg -3' miRNA: 3'- uGCUGGC--UGCU-CG-CUUuUCGuuCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 106256 | 0.66 | 0.996996 |
Target: 5'- cGCGaACCGGCGAGCGccgcgcgucGcgccgccucggacGGCGAGAGa -3' miRNA: 3'- -UGC-UGGCUGCUCGCuu-------U-------------UCGUUCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 121802 | 0.66 | 0.996946 |
Target: 5'- cGCGACCGGCcGGCGccugccgcuGCAGGAu- -3' miRNA: 3'- -UGCUGGCUGcUCGCuuuu-----CGUUCUcc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 140028 | 0.66 | 0.996528 |
Target: 5'- cGCGGCCcccGCGGGCGGcgGGAGacacggaAAGGGGc -3' miRNA: 3'- -UGCUGGc--UGCUCGCU--UUUCg------UUCUCC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 3742 | 0.66 | 0.996528 |
Target: 5'- cGCGACCGcaACGcGCGucacGGCGGGGcGGg -3' miRNA: 3'- -UGCUGGC--UGCuCGCuuu-UCGUUCU-CC- -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 18516 | 0.66 | 0.996528 |
Target: 5'- cGCGACCG-CGAacgcggccGCGAAcgcGAGCAcGAGc -3' miRNA: 3'- -UGCUGGCuGCU--------CGCUU---UUCGUuCUCc -5' |
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10982 | 5' | -51 | NC_002794.1 | + | 127638 | 0.66 | 0.996528 |
Target: 5'- gACG-CCGACGAcCGAGAcccGaCGGGGGGg -3' miRNA: 3'- -UGCuGGCUGCUcGCUUUu--C-GUUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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