miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 121914 0.66 0.976068
Target:  5'- uGGACGucgcccgccGCGGGggaagaGGCCGaCGCGCugAUc -3'
miRNA:   3'- -CCUGCu--------UGUCUa-----UCGGC-GCGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 115577 0.66 0.976068
Target:  5'- cGGCGAACGGGacgUAGCgGCuGCGguCGa -3'
miRNA:   3'- cCUGCUUGUCU---AUCGgCG-CGCguGUg -5'
10983 3' -54.3 NC_002794.1 + 59202 0.66 0.976068
Target:  5'- cGACGcGCAcGUcggcgucucGGCCGCG-GCGCGCg -3'
miRNA:   3'- cCUGCuUGUcUA---------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 81581 0.66 0.976068
Target:  5'- cGGACGAagaagaagACGGAcccgcggccggAGUCGCGgacgaGCACGCg -3'
miRNA:   3'- -CCUGCU--------UGUCUa----------UCGGCGCg----CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 91229 0.66 0.976068
Target:  5'- cGGACGGcgcgGCGGccgucgGGCUGCGCucGCGgACg -3'
miRNA:   3'- -CCUGCU----UGUCua----UCGGCGCG--CGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 181744 0.66 0.976068
Target:  5'- -cGCGAGCGGccGGCCaGCcCGCugACg -3'
miRNA:   3'- ccUGCUUGUCuaUCGG-CGcGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 118831 0.66 0.976068
Target:  5'- aGGACGAGaugaAGAgcgugucGCUGaCGCGCuCGCa -3'
miRNA:   3'- -CCUGCUUg---UCUau-----CGGC-GCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 14570 0.66 0.973504
Target:  5'- aGGCGAGCcggccgaccgaAGcgGGCCGUGgcgaGCGCGCc -3'
miRNA:   3'- cCUGCUUG-----------UCuaUCGGCGCg---CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 152219 0.66 0.973504
Target:  5'- aGGCGu-CGGAc-GUCGCGCGC-CACg -3'
miRNA:   3'- cCUGCuuGUCUauCGGCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 87842 0.66 0.973504
Target:  5'- -cGCGcGCAuAUAcCCGCGCGUGCGCg -3'
miRNA:   3'- ccUGCuUGUcUAUcGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 67304 0.66 0.973504
Target:  5'- cGACGAccCAGGUcgGGUCGCGCccGUACAUc -3'
miRNA:   3'- cCUGCUu-GUCUA--UCGGCGCG--CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 188932 0.66 0.973504
Target:  5'- -aGCGGACAGGcccgcuGuCCGgGCGUGCGCa -3'
miRNA:   3'- ccUGCUUGUCUau----C-GGCgCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 69784 0.66 0.973504
Target:  5'- cGACGAGCcacgAGAgcGCCGCcGCGUAgccCGCc -3'
miRNA:   3'- cCUGCUUG----UCUauCGGCG-CGCGU---GUG- -5'
10983 3' -54.3 NC_002794.1 + 92500 0.66 0.973504
Target:  5'- uGGACGAgGCGGccAUGGCCcugguguccgagGUGCGCAUg- -3'
miRNA:   3'- -CCUGCU-UGUC--UAUCGG------------CGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 19499 0.66 0.973504
Target:  5'- cGACGAcgGCGGAggucgcGCCGCucggaGCGCcgGCGCg -3'
miRNA:   3'- cCUGCU--UGUCUau----CGGCG-----CGCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 114641 0.66 0.973504
Target:  5'- cGGAgcuCGAGCugccGGUGcuguUCGCGCGCGCGCc -3'
miRNA:   3'- -CCU---GCUUGu---CUAUc---GGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 151482 0.66 0.970747
Target:  5'- aGGACG-ACGaGUGGCUGUacaaacGCGUGCGCu -3'
miRNA:   3'- -CCUGCuUGUcUAUCGGCG------CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 102679 0.66 0.970747
Target:  5'- uGGGCGAcCGGGU-GUCGUacGUGCugACg -3'
miRNA:   3'- -CCUGCUuGUCUAuCGGCG--CGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 34761 0.66 0.970747
Target:  5'- cGGugGGACGcGGcacGGCCGCcCGCGC-Ca -3'
miRNA:   3'- -CCugCUUGU-CUa--UCGGCGcGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 35544 0.66 0.970747
Target:  5'- -cGCGAGaccCGGc--GCuCGCGCGCGCGCg -3'
miRNA:   3'- ccUGCUU---GUCuauCG-GCGCGCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.