Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10983 | 3' | -54.3 | NC_002794.1 | + | 59132 | 0.73 | 0.689253 |
Target: 5'- aGGcCGAcuucgcGCAG--GGCCGCGuCGCGCACg -3' miRNA: 3'- -CCuGCU------UGUCuaUCGGCGC-GCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 93902 | 0.73 | 0.689253 |
Target: 5'- uGGACGGACAGGagugccUAGCCGCGUcCAUc- -3' miRNA: 3'- -CCUGCUUGUCU------AUCGGCGCGcGUGug -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 40311 | 0.73 | 0.703261 |
Target: 5'- aGGAgGGACGGuuuuccucacccGCCGCGCGgACGCg -3' miRNA: 3'- -CCUgCUUGUCuau---------CGGCGCGCgUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 190576 | 0.73 | 0.689253 |
Target: 5'- -cGCGAACGGGUAGCUcuCGCGC-CGCa -3' miRNA: 3'- ccUGCUUGUCUAUCGGc-GCGCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 103929 | 0.73 | 0.689253 |
Target: 5'- cGGCGAGCAGcgcgcGUGGCCGC-CGC-CGCu -3' miRNA: 3'- cCUGCUUGUC-----UAUCGGCGcGCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 31922 | 0.72 | 0.785829 |
Target: 5'- cGACaGGACGuccAGCCGCGCcGCACGCu -3' miRNA: 3'- cCUG-CUUGUcuaUCGGCGCG-CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 72141 | 0.72 | 0.738687 |
Target: 5'- aGGAa-AGCGG-UAGCCGaguaCGCGCACACg -3' miRNA: 3'- -CCUgcUUGUCuAUCGGC----GCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 105206 | 0.72 | 0.7645 |
Target: 5'- cGGACGcggugaucagggucGACAG--GGCCGUGCGCgGCGCc -3' miRNA: 3'- -CCUGC--------------UUGUCuaUCGGCGCGCG-UGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 134931 | 0.72 | 0.789468 |
Target: 5'- cGGGCGGACGGGcUaucuguauguggcgaAGCCGCGCGaccccugcuucCACGCc -3' miRNA: 3'- -CCUGCUUGUCU-A---------------UCGGCGCGC-----------GUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 158739 | 0.72 | 0.757882 |
Target: 5'- aGACGGccCGGGUAG-UGUGCGCGCACg -3' miRNA: 3'- cCUGCUu-GUCUAUCgGCGCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 103413 | 0.72 | 0.785829 |
Target: 5'- cGuCGGGCAGc--GCCGCGUGCACGa -3' miRNA: 3'- cCuGCUUGUCuauCGGCGCGCGUGUg -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 60627 | 0.72 | 0.785829 |
Target: 5'- cGGACGGGCGGAcccggcgccGGCgGCGCcggccacccgGCGCGCg -3' miRNA: 3'- -CCUGCUUGUCUa--------UCGgCGCG----------CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 99574 | 0.72 | 0.737717 |
Target: 5'- cGGGCGAgggggguGCGGAgggcgcGGCgGCgGCGCGCGCu -3' miRNA: 3'- -CCUGCU-------UGUCUa-----UCGgCG-CGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 13102 | 0.72 | 0.775712 |
Target: 5'- gGGACGAggugcguucgGCGGGgucGCCGCGCGgcucgcuCGCGCg -3' miRNA: 3'- -CCUGCU----------UGUCUau-CGGCGCGC-------GUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 25125 | 0.72 | 0.748335 |
Target: 5'- aGAuCGAGCGG--GGCaCGCGCGCACGg -3' miRNA: 3'- cCU-GCUUGUCuaUCG-GCGCGCGUGUg -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 186645 | 0.72 | 0.738687 |
Target: 5'- --cCGcGCGGGUcGGCCGCGCGCACc- -3' miRNA: 3'- ccuGCuUGUCUA-UCGGCGCGCGUGug -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 70230 | 0.72 | 0.738687 |
Target: 5'- cGGGCGGGCGGccGGCCGCcccGCaGCAgACg -3' miRNA: 3'- -CCUGCUUGUCuaUCGGCG---CG-CGUgUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 48580 | 0.72 | 0.785829 |
Target: 5'- uGGGCGAGcCGGAggAGCgGCGCGU-CGCc -3' miRNA: 3'- -CCUGCUU-GUCUa-UCGgCGCGCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 353 | 0.72 | 0.766381 |
Target: 5'- cGACG-GCAGAUuuucacggcaaacGGCCGCGCgauccccgGCACGCu -3' miRNA: 3'- cCUGCuUGUCUA-------------UCGGCGCG--------CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 49744 | 0.72 | 0.738687 |
Target: 5'- uGGCGAGCccGUAgGCCGCuCGCACGCg -3' miRNA: 3'- cCUGCUUGucUAU-CGGCGcGCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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